Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0702 |
Symbol | glyA |
ID | 5193074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 787031 |
End bp | 788284 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640585160 |
Product | serine hydroxymethyltransferase |
Protein accession | YP_001266050 |
Protein GI | 148545948 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0603318 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0336909 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGCC GTGATTTGAC CATTGCCAAG TACGACGCCG AGCTCTTCGA AGCCATGCAG CAAGAAGCTC TGCGCCAGGA AGAGCATATC GAGCTGATCG CTTCGGAAAA CTACACCAGC CCGGCAGTCA TGGAAGCCCA GGGCTCGGTC CTGACCAACA AGTACGCCGA AGGCTACCCA GGCAAGCGCT ACTACGGCGG TTGCGAGTAC GTCGACGTCG TCGAGCAACT GGCCATCGAC CGTGCCAAGG AGCTGTTCGG CGCCGACTAC GCCAACGTAC AGCCGCACGC TGGCTCCCAG GCCAACGCTG CCGTCTACCT GGCCCTGCTG TCTGCCGGTG ACACCATCCT GGGCATGAGC CTGGCCCACG GTGGCCACCT GACCCACGGT GCTTCGGTAA GCTCCTCGGG CAAGCTGTAC AACGCCATCC AGTACGGCAT CGACGGCAAT GGCCTGATCG ACTACGACGA AGTCGAGCGC CTGGCTGTCG AGCACAAGCC CAAGATGATC GTTGCCGGCT TCTCGGCCTA CTCGCAGGTT CTGGACTTCG CCCGCTTCCG CGCCATCGCC GACAAGGTCG GTGCCTACCT GTTCGTCGAC ATGGCCCACG TTGCCGGCCT GGTTGCCGCT GGTGTGTACC CGAACCCTGT TCCGTTCGCC GACGTGGTCA CCACCACCAC CCACAAGACC CTGCGCGGCC CGCGCGGTGG CCTGATCCTG GCCCGTGCCA ACGCCGACAT CGAGAAGAAG CTGAACTCCG CCGTCTTCCC GGGCGCCCAG GGCGGCCCGC TGGAGCACGT CATCGCGGCC AAGGCCATCT GCTTCAAGGA AGCCCTGCAG CCAGAGTTCA AGGCTTACCA GCAGCAGGTC GTGAAGAACG CCCAGGCCAT GGCCAGCGTG TTCATCGAGC GCGGTTTCGA CGTGGTTTCC GGTGGCACCC AGAACCACCT GTTCCTGCTG TCGCTGATCA AGCAGGAAAT CTCCGGTAAG GATGCTGACG CCGCACTGGG CAAAGCTTTC ATCACCGTCA ACAAGAACTC GGTACCGAAC GACCCGCGTT CGCCGTTCGT CACCTCGGGC CTGCGTTTCG GCACCCCAGC CGTGACCACC CGTGGTTTCA AGGAAGCCGA GTGCAAGGAA CTGGCCGGCT GGATCTGCGA CATCCTGGCC GACCTGAACA ACGAAGCGGT GATCGACGCC GTCCGTGAGA AGGTCAAGGC CATCTGCAAG AAGCTGCCGG TTTACGGCAA CTGA
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Protein sequence | MFSRDLTIAK YDAELFEAMQ QEALRQEEHI ELIASENYTS PAVMEAQGSV LTNKYAEGYP GKRYYGGCEY VDVVEQLAID RAKELFGADY ANVQPHAGSQ ANAAVYLALL SAGDTILGMS LAHGGHLTHG ASVSSSGKLY NAIQYGIDGN GLIDYDEVER LAVEHKPKMI VAGFSAYSQV LDFARFRAIA DKVGAYLFVD MAHVAGLVAA GVYPNPVPFA DVVTTTTHKT LRGPRGGLIL ARANADIEKK LNSAVFPGAQ GGPLEHVIAA KAICFKEALQ PEFKAYQQQV VKNAQAMASV FIERGFDVVS GGTQNHLFLL SLIKQEISGK DADAALGKAF ITVNKNSVPN DPRSPFVTSG LRFGTPAVTT RGFKEAECKE LAGWICDILA DLNNEAVIDA VREKVKAICK KLPVYGN
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