Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0579 |
Symbol | |
ID | 5193987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 645334 |
End bp | 645981 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640585031 |
Product | SNARE associated Golgi protein |
Protein accession | YP_001265931 |
Protein GI | 148545829 |
COG category | [S] Function unknown |
COG ID | [COG0586] Uncharacterized membrane-associated protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.6837 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.582888 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTCA ACCCGCTGGA CCTTATCCTG CATCTCGATG CCTACCTCGA TCTGCTGGTC ACCAATTACG GTCCCTGGAT CTACGCCATC CTGTTCACCG TGATCTTCTG CGAAACCGGC CTGGTAGTGA TGCCATTCCT GCCAGGCGAC TCGCTGCTGT TCATCGCCGG CGCCGTGGCG GCGGGTGGCG GCATGGACCC GGTGCTGCTG GCCGGCCTGC TGATGGCCGC TGCAATCCTG GGCGACAGTA CCAATTACGT GATCGGCCGA ACAGCCGGCG AGCGTTTGTT CAACAACCCC AACTCCAAGA TCTTCCGCCG CGACTACCTG CAGCGTACCC ACGATTTCTA TGAACGCCAT GGCGGCAAGA CCGTGACCAT GGCGCGCTTC CTGCCCATCT TGCGCACCTT CGCACCGTTC GTCGCGGGCA TCGCTCACAT GCACTATCCA CGCTTCCTCG GCTTCAGCGT TGCCGGTTCG CTGCTTTGGG TCGGCGGCCT GGTCACCTTG GGCTACTTCT TCGGCAACGT GCCGTTCATC AAGCAGCACC TGTCGCTGAT GGTGGTGGGC ATCATCATCC TGTCGCTGGT GCCGATGATT CTCGGCTTGC TGCGTGGGCG CCTGGGCCGT ACGGCCAAGG CTCACTGA
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Protein sequence | MDFNPLDLIL HLDAYLDLLV TNYGPWIYAI LFTVIFCETG LVVMPFLPGD SLLFIAGAVA AGGGMDPVLL AGLLMAAAIL GDSTNYVIGR TAGERLFNNP NSKIFRRDYL QRTHDFYERH GGKTVTMARF LPILRTFAPF VAGIAHMHYP RFLGFSVAGS LLWVGGLVTL GYFFGNVPFI KQHLSLMVVG IIILSLVPMI LGLLRGRLGR TAKAH
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