Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0528 |
Symbol | |
ID | 5193980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 597221 |
End bp | 599143 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640584982 |
Product | selenocysteine-specific translation elongation factor |
Protein accession | YP_001265882 |
Protein GI | 148545780 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00475] selenocysteine-specific elongation factor SelB [TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.465523 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCGTTG GTACCGCTGG CCACATCGAC CACGGCAAGA CCGCACTGCT GCTGGCGCTG ACCGGCCAGG CCGGCGATCA GCGGCAAGAA GAGCGCGCCC GCGGCATGAC CATCGACCTT GGCTACCGCT ATGCGGCGCT GAGCGAAGGC GCGCCGCTGA CCGGCTTCAT CGATGTGCCG GGCCACGAGC GTTTTATCCA CAACATGCTG GCCGGCGCCC ATGGCATCGA CCTGGTGCTG TTGGTAGTGG CGGCCGACGA CGGGGTCATG CCGCAGACCC GTGAGCACCT GGCGATCATC GAGCTGCTGG GCATTCCCCA GGCCTTGGTG GCGATCAGCA AATGCGACCG GGTCGAGCCG TCGCGTCTGG CCGAGGTGCA GATGCAAGTC AGTGAATTGC TGGCGCCTGG GCCATATGCC GGTGCGCGGC AGTTTCCGCT GTCGAGCATC AGCGGGGAGG GCGTGGACGC GTTGCGCCAG GCCCTGCTGG AGGCCGAAGC AGGTACACGG CAGCGTAGTG TCGTCGGTGG TTTTCGCCTG GCCGTCGACC GTGCCTTTGC GGTTACCGGC GCCGGAGTGG TGGTCACCGG CACGGCACTG GCCGGGCGGG TCAGTGCGGG TGATACGTTG TTGCTGGGCA AGGCCGGCAA GGTGGTACGC GTGCGTGGCC TGCATGCACA GAACCAGGCC GCGTTGGTGG CAGAAGCAGG CCAACGGGTG GCGCTGAACA TCGCTGCCGA GCGCCTGGCC GTGGAGCAGG TGCACCGGGG CGACTGGCTG GTGCCCGAAT GGTTGCATGC GCCCAGTGTT CGGGTGGATA TCGAGCTGAA CCTGTTACCT GGCGAGAAGC GTGCTTTCGA ACATTTCAGT GCTGTGCATG TGCACCTCGG CACCCAGGAT GTAACGGCCC GGGTCGCCTT GCTCGAAGGC GAAAGCCTGG CTGCCGGCCA ACGCATGTTT GCCCAGTTGT TGCTCAACGC GCCGTTGCAG GCCGTGCACG GCGACCGCCT GGTGCTGCGC GATCAGCGCG CCCAACGCAC ACTGGGCGGC GGCAAGGTGC TCGACCCGTT CGCCCCAAGC CGCCAACGCC GCAGCGATGC CCGTCTGCAG CAGTTGCAGG TGCTGCGCGA TGCAGCGGAT CTGGAGCAGG CACTGCCAGC ACTGCTCGCC AGTGCACCGG GCGGCATTAG CCCGCAGCGA CTCGAGCGGC AGTTCAACCG CCTGCGGGAA ACCTGGCAGT TACCGGATGA TGTGCGGGTG GTGGCCACCC GGCAGGGCCA ACTGCTGTTC GCCAACGCCC AATGGCAGGC GCTCAAGCAG CAGGTTCTGG AACAGCTGGC GCGCTTTCAC GAGCAAGAGC CCGACCAGCT CGGCCCGGAC CGCGATCGCC TGCGGCGCTT TGTAGCCTTG CCCCTGGAAC GGCCGGCTTT CGTCAGCCTG CTGGATGAAC TGCTCGACGA CAGCGCCATC GCCAGCAGCG GGCCATGGCT GCATCTGCCC GACCACAAGG TGCAGTTGAG CGAAGCCGAC AGTGCATTGT GGGCACGTCT GCAGCCGAAG TTGATCGCAG GGCAATACGA CCCACCTTGG GTCAGGACGC TGGCGGGTGA GGAGAACCGT GCCGAAGCCG ATGTGCGCCT GTTACTGCGC AAGTTGGCCC GGCTGGGCCT GGTGCATCAA GTGGTGCGCG ACCTGTTCTA TCCAGAGGCG ACGCTGCAGC GCATGGCAGC GTTGATGCTG GGGCAGGCCA GCGAAACGCA GATAGTGCAG GTTGCCGCGT TTCGCGATAT GTTGGGCATC GGTCGCAAGC GCAGTGTGCA GATTCTGGAA TACTTCGACC GCATCGGTCT GACCCGGAGG GTGGCCGACC AGCGTCACAT CCGCGCCGAC AGCGCCCTGG CCCAACAGCA GGCCAGGCAC TGA
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Protein sequence | MIVGTAGHID HGKTALLLAL TGQAGDQRQE ERARGMTIDL GYRYAALSEG APLTGFIDVP GHERFIHNML AGAHGIDLVL LVVAADDGVM PQTREHLAII ELLGIPQALV AISKCDRVEP SRLAEVQMQV SELLAPGPYA GARQFPLSSI SGEGVDALRQ ALLEAEAGTR QRSVVGGFRL AVDRAFAVTG AGVVVTGTAL AGRVSAGDTL LLGKAGKVVR VRGLHAQNQA ALVAEAGQRV ALNIAAERLA VEQVHRGDWL VPEWLHAPSV RVDIELNLLP GEKRAFEHFS AVHVHLGTQD VTARVALLEG ESLAAGQRMF AQLLLNAPLQ AVHGDRLVLR DQRAQRTLGG GKVLDPFAPS RQRRSDARLQ QLQVLRDAAD LEQALPALLA SAPGGISPQR LERQFNRLRE TWQLPDDVRV VATRQGQLLF ANAQWQALKQ QVLEQLARFH EQEPDQLGPD RDRLRRFVAL PLERPAFVSL LDELLDDSAI ASSGPWLHLP DHKVQLSEAD SALWARLQPK LIAGQYDPPW VRTLAGEENR AEADVRLLLR KLARLGLVHQ VVRDLFYPEA TLQRMAALML GQASETQIVQ VAAFRDMLGI GRKRSVQILE YFDRIGLTRR VADQRHIRAD SALAQQQARH
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