| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0487 |
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| Symbol | rplC |
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| ID | 5191313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 566143 |
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| End bp | 566778 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640584941 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_001265841 |
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| Protein GI | 148545739 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000000838631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0709669 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTATTG GTGTAATCGG TCGCAAGTGC GGTATGACCC GCATTTTCAC CGAAGAAGGT
GTCTCCATTC CGGTCACGGT CATTGAGATC GAGCCGAATC GCGTCACCCA GTTCAAAACT
GAAGAAACCG ATGGCTACCG TGCAGTGCAA GTCACTGTCG GCGAGCGTCG TGCTTCGCGT
GTGACTGCCG CTCAGGCAGG CCACTTCGCC AAGGCCAACG TTGCCGCTGG TCGCGGTGTT
TGGGAGTTCC GTCTTGAAGA AGGCGATTTC CAGGCTGGCG ATCTGATCAA AGCTGAACTC
TTCACTGCAG GCCAGCTGGT TGACGTTACT GGTCAGTCCA AAGGTAAAGG CTTCGCCGGT
ACCATCAAGC GCTGGAACTT CCGTGGTCAG GACAACACCC ACGGTAACTC CGTGTCGCAC
CGTGTTCCTG GTTCCATCGG CCAGTGCCAG ACTCCTGGTC GTGTGTTCAA GGGCAAGAAA
ATGTCCGGTC ACATGGGCGC CGAGCGCGTG ACTGTTCAGT CCCTGGAAGT AGTTCGCGTA
GACGCTGAAC GCAACCTGCT GCTGATCAAG GGTGCCGTAC CTGGCGCTAC TGGCGGCGAC
GTGGTTGTAC GTCCAGCTGT CAAGGCTCGC GGTTAA
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| Protein sequence | MTIGVIGRKC GMTRIFTEEG VSIPVTVIEI EPNRVTQFKT EETDGYRAVQ VTVGERRASR
VTAAQAGHFA KANVAAGRGV WEFRLEEGDF QAGDLIKAEL FTAGQLVDVT GQSKGKGFAG
TIKRWNFRGQ DNTHGNSVSH RVPGSIGQCQ TPGRVFKGKK MSGHMGAERV TVQSLEVVRV
DAERNLLLIK GAVPGATGGD VVVRPAVKAR G
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