Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0480 |
Symbol | rpoB |
ID | 5191203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 552713 |
End bp | 556786 |
Gene Length | 4074 bp |
Protein Length | 1357 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640584933 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001265834 |
Protein GI | 148545732 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.262679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0306779 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC GTCATGGATG TGCCTTACCT CCTGGCCATC CAGCTGGATT CGTATCGCGA ATTCCTGCAA GCGGGAGCAT CCAAGGATCA CTTCCGCGAC GTCGGCCTGC ACGCGGCCTT CAAATCGGTA TTCCCGATCA TCAGCTACTC CGGCAATGCT GCCCTGGAGT ACGTAGGCTA TCGCCTGGGC GAACCCGCCT TCGATGTGAA GGAATGTGTC CTGCGTGGCG TGACCTTCGC GGTCCCACTG CGGGTCAAGG TGCGCCTGAT CATCTTCGAC AAGGAATCGT CGAACAAAGC GATCAAGGAC ATCAAAGAGC AAGAAGTCTA CATGGGTGAA ATCCCCCTGA TGACTGAGAA CGGTACCTTC GTTATCAACG GTACCGAGCG TGTGATCGTT TCCCAACTGC ACCGTTCGCC TGGTGTGTTC TTCGACCACG ACCGTGGCAA GACCCACAGC TCGGGCAAGC TGCTGTACTC CGCTCGCATC ATCCCTTACC GCGGTTCCTG GCTGGACTTC GAGTTCGACC CGAAGGACTG CGTGTTCGTG CGTATCGACC GTCGCCGCAA ATTGCCGGCC TCGGTGCTGC TGCGCGCCCT GGGTTACAGC ACTGAAGAAG TGCTGAATAC CTTCTACACC ACCAACGTGT TCCACATTTC CGGCGAAAAA CTCAGCCTGG AACTGGTGCC ACAGCGTCTG CGTGGTGAAG TTGCAGTCAT GGACATCCAT GACGAAACCG GCAAAGTCAT CGTCGAGCAA GGCCGCCGTA TTACCGCGCG CCACATCAAC CAGCTCGAGA AGGCCGGCGT CAAGCAACTG GACGTTCCAA TGGAATACGT CCTGGGCCGC ACTACCGCCA AGGCTATCGT GCATCCGGCT ACCGGCGAAA TTCTCGCCGA ATGCAACACC GAGATGACCA CCGAGCTGCT GATCAAGGTC GCCAAGGCGC AGGTTGTCCG TATCGAGACC CTGTACACCA ACGACATCGA TTGCGGTCCG TTCATCTCTG ACACTCTGAA GATCGATACC ACCAGCAACC AGCTGGAAGC TCTGGTCGAG ATCTACCGCA TGATGCGTCC AGGCGAGCCG CCAACCAAGG ATGCAGCCGA GACCCTGTTC AACAACCTGT TCTTCAGTGC CGAGCGTTAC GATCTGTCCG CCGTAGGCCG CATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAGATCGAG GGTTCGGGCG TGCTGAGCAA GGAAGACATC GTCGAGGTTC TGAAGACCCT GGTCGATATC CGTAACGGCA AAGGTATCGT CGACGACATC GACCACCTGG GTAACCGCCG CGTACGTTGC GTCGGCGAGA TGGCCGAGAA CCAGTTCCGT GTTGGCCTGG TGCGTGTCGA GCGCGCGGTC AAGGAACGCC TGTCGATGGC GGAAAGCGAA GGCCTGATGC CGCAAGACCT GATCAACGCC AAGCCGGTAG CGGCGGCGGT GAAAGAGTTC TTTGGCTCCA GCCAGCTGTC CCAGTTCATG GACCAGAACA ACCCTCTCTC GGAGATTACC CACAAGCGCC GCGTCTCTGC ACTCGGCCCT GGCGGTCTGA CCCGTGAGCG TGCCGGCTTC GAAGTCCGTG ACGTACACCC GACCCACTAT GGCCGTGTGT GCCCGATCGA GACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCTTG GCGGCCTACG CCCGCACCAA CCAGTACGGC TTCCTGGAAA GCCCGTACCG CGTGGTTAAG GAAGGCGTTG TAAGTGACGA CATCGTGTTC CTGTCGGCAA TCGAAGAGGC GGATCACGTC ATCGCACAGG CTTCGGCCGC GATGAACGAC AAGAAGCAAC TGATCGATGA GCTGGTAGCA GTTCGTCACC TGAACGAATT CACCGTCAAG GCGCCGGAAG ACGTCACCCT GATGGACGTT TCGCCGAAGC AGGTTGTTTC CGTTGCAGCG TCGCTGATTC CGTTCCTCGA GCACGACGAC GCCAACCGTG CGTTGATGGG TTCGAACATG CAGCGTCAGG CTGTACCAAC CCTGCGTGCC GACAAGCCGC TGGTAGGTAC CGGCATGGAG CGCAACGTTG CCCGTGACTC CGGTGTCTGT GTGGTTGCTC GCCGCGGTGG TGTGATCGAC TCGGTCGACG CTAGCCGTAT CGTTGTTCGC GTTGCCGACG ACGAAGTGGA AACCGGCGAA GCAGGTGTGG ATATCTACAA CCTGACCAAG TACACCCGTT CGAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAAGGTGAC AAGGTTCAGC GTGGTGACAT CATGGCCGAC GGCCCGTCCA CCGACATGGG TGAGCTGGCT CTGGGTCAGA ACATGCGCAT CGCGTTCATG GCGTGGAACG GCTTCAACTT CGAAGACTCC ATCTGCCTGT CCGAGCGTGT GGTTCAGGAA GATCGCTTCA CCACCATCCA CATTCAGGAA CTGACCTGTG TGGCGCGTGA CACCAAGCTC GGCCCAGAGG AAATCACTGC GGACATCCCG AACGTGGGTG AAGCCGCACT GAACAAGCTG GACGAAGCCG GTATCGTTTA CGTAGGTGCT GAAGTTGGCG CTGGCGACAT CCTGGTTGGC AAGGTCACGC CAAAAGGCGA AACCCAGCTG ACTCCGGAAG AAAAACTGCT GCGCGCAATC TTCGGTGAGA AGGCCAGCGA CGTTAAGGAC ACCTCCCTGC GTGTGCCAAC CGGCACCAAG GGTACTGTCA TCGATGTACA GGTCTTCACC CGTGATGGCG TGGAGCGCGA TAGCCGCGCG CTGGCCATCG AGAAGATGCA GCTCGACGAG ATCCGCAAGG ACCTCAACGA AGAGTTCCGC ATTGTTGAAG GTGCAACCTT CGAGCGTCTG CGTTCTGCCC TGAACGGCCA GGTGGTTGAT GGTGGTGCGG GCCTGAAGAA AGGCACCGTG ATCACTGACG AGGTGCTGGA CGGTCTGGAG CACGGCCAGT GGTTCAAACT GCGCATGGCT GAAGATGCAC TGAACGAGCA GCTGGAAAAG GCTCAGCAGT ACATCGTCGA CCGTCGCCGT CTGCTGGACG ACAAGTTCGA AGACAAGAAG CGCAAGCTGC AGCAGGGCGA TGACCTGGCA CCGGGCGTAC TGAAGATCGT CAAGGTTTAC CTGGCAATCC GCCGTCGCAT CCAGCCGGGT GACAAGATGG CCGGTCGTCA CGGTAACAAG GGCGTTGTCT CGGTCATCAT GCCGGTTGAA GACATGCCGC ACGATGCCAA CGGTACTCCG GTTGACGTCG TACTGAACCC GCTGGGTGTA CCTTCGCGTA TGAACGTTGG TCAGATCCTT GAAACCCACC TGGGCCTCGC GGCCAAGGGT CTGGGCGAGA AGATCGACCG CATGCTCGAA GAGCAGCGTA AAGCTGCTGA GCTGCGCGTG TTCCTGACCG AGGTCTACAA CGAGATCGGC GGTCGTCAGG AAAACCTCGA CGAGTTCACC GACGAAGAGA TCCTGGCCCT GGCTAACAAC CTGAAGAAAG GCGTGCCGAT GGCTACCCCG GTCTTCGATG GTGCCAAGGA GCGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCA GAGAGCGGCC AGATGGTGCT GTTCGACGGC CGTACCGGCA ACAAGTTCGA GCGTCCTGTG ACCGTTGGTT ACATGTACAT GCTCAAGCTG AACCACTTGG TGGACGACAA GATGCACGCG CGTTCCACTG GTTCCTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCGCAGTTC GGTGGTCAGC GTTTCGGGGA GATGGAAGTG TGGGCGCTGG AAGCATACGG CGCGGCATAC ACCCTGCAAG AAATGCTCAC AGTGAAGTCG GACGACGTGA ACGGCCGTAC CAAGATGTAC AAGAACATCG TGGATGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC CTTCAACGTG TTGATCAAAG AGATCCGTTC GCTCGGTATC GATATCGATC TGGAAACCGA ATAA
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Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGASKDHFRD VGLHAAFKSV FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD KESSNKAIKD IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEVLNTFYT TNVFHISGEK LSLELVPQRL RGEVAVMDIH DETGKVIVEQ GRRITARHIN QLEKAGVKQL DVPMEYVLGR TTAKAIVHPA TGEILAECNT EMTTELLIKV AKAQVVRIET LYTNDIDCGP FISDTLKIDT TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSAERY DLSAVGRMKF NRRIGRTEIE GSGVLSKEDI VEVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK EGVVSDDIVF LSAIEEADHV IAQASAAMND KKQLIDELVA VRHLNEFTVK APEDVTLMDV SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC VVARRGGVID SVDASRIVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD KVQRGDIMAD GPSTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGETQL TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LAIEKMQLDE IRKDLNEEFR IVEGATFERL RSALNGQVVD GGAGLKKGTV ITDEVLDGLE HGQWFKLRMA EDALNEQLEK AQQYIVDRRR LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDVVLNPLGV PSRMNVGQIL ETHLGLAAKG LGEKIDRMLE EQRKAAELRV FLTEVYNEIG GRQENLDEFT DEEILALANN LKKGVPMATP VFDGAKEREI KAMLKLADLP ESGQMVLFDG RTGNKFERPV TVGYMYMLKL NHLVDDKMHA RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
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