Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0421 |
Symbol | |
ID | 5194712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 486003 |
End bp | 487853 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640584865 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001265775 |
Protein GI | 148545673 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0853887 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCG CGGTCGTGAG CAGGGCTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCG GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT GCTCCGGATG CGGATGCCCT TCTGTTGGCG GAAGCCGACA CCGATGAAGC CGCGGCCGAA GAAGCCGCTG CTGCATTGGC GGCAGTTGAA ACCGATATCG GCCGCACGAC CGACCCGGTG CGCATGTATA TGCGCGAAAT GGGTACTGTC GAGCTGCTGA CCCGCGAAGG CGAGATCGAA ATCGCCAAGC GTATCGAGGA AGGCATTCGT GAAGTCATGG GCGCTATCGC CCACTTCCCG GGCACTGTCG ACTACATTCT CGGCGAATAT GATCGCGTCA CCACCGAGGG TGGCCGCCTG TCGGACGTTC TCAGCGGTTA CATCGACCCT GACGACAACA TTGCCGCGCC AACCGAAGAA GTGCCGATCC CAGGCGCCAA GGCCGCTGCG GCGAAGGAAG AGTCCGACGA CGACGAAGAA GAATCCGAAA GCGGTGACGA CGAGGAAGAG GCCGAGAGCG GCCCGGACCC GGTAGTCGCA GCCCAACGCT TCGGTGCGGT ATCCGATCAG CTTCAGGCGA CCTCCAAGGT CCTGAAGAAA AATGGTCGTA ACCACAAGGA AAGCATCGAG GCCCTGCAGG CCCTGGCTGA CCTGTTCATG CCGATCAAGC TGGTACCGAA GCAGTTCGAG GTACTGGTCG AGCGTGTACG TGATGCCCTG AACCGTCTGC GGCAGCAAGA ACGCGCCATC ATGCAGCTCT GCGTACGTGA CGCCCGCATG CCGCGAGCCG ACTTCCTGCG CATGTTCCCA AGCAACGAAA CCGACCAGAC CTGGAGCGGT GACCTGGCCA AGCGCAACAC CAAGTGGGCT GCCGCCCTGG GTGAAAAGAA CGCTGCCATC GTCGCTTGCC AACAGAAGCT GATCGACCTT GAGACCGAAA CCGGCCTGAC CGTTGCCGAG ATCAAGGAAA TCAACCGTCG CATGTCGATC GGTGAAGCCA AGGCCCGCCG CGCCAAGAAA GAAATGGTCG AGGCGAACCT GCGTCTGGTG ATTTCCATCG CCAAGAAGTA CACCAACCGT GGCCTGCAGT TCCTCGACCT GATCCAGGAA GGCAACATCG GTCTGATGAA AGCGGTGGAC AAGTTCGAAT ACCGTCGCGG CTACAAGTTC TCGACCTATG CCACCTGGTG GATCCGTCAG GCGATCACCC GTTCGATCGC CGACCAGGCA CGCACCATCC GGATTCCGGT GCACATGATC GAGACGATCA ACAAGCTCAA CCGTATTTCC CGCCAAATGC TGCAGGAAAT GGGTCGCGAA CCGACTCCGG AAGAGCTGGG CGAGCGCATG GAAATGCCTG AGGACAAAAT CCGCAAGGTA CTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA CGAAGATTCG CACCTGGGCG ACTTCATCGA GGACTCGACC ATGCAGTCCC CGATCGACGT AGCCACGGTC GAAAGCCTCA AGGAAGCCAC CCGTGACGTG CTCTCGGGCC TGACCGCACG TGAAGCCAAG GTGCTGCGCA TGCGTTTCGG TATCGACATG AACACCGACC ACACCCTCGA AGAGGTGGGC AAGCAGTTTG ACGTAACGCG TGAGCGGATC CGTCAGATCG AAGCGAAGGC GTTGCGCAAG CTGCGCCACC CGACTCGCAG CGAGCACCTG CGCTCCTTCC TCGACGAGTG A
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Protein sequence | MSGKAQQQSR IKELITRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE IAKRIEEGIR EVMGAIAHFP GTVDYILGEY DRVTTEGGRL SDVLSGYIDP DDNIAAPTEE VPIPGAKAAA AKEESDDDEE ESESGDDEEE AESGPDPVVA AQRFGAVSDQ LQATSKVLKK NGRNHKESIE ALQALADLFM PIKLVPKQFE VLVERVRDAL NRLRQQERAI MQLCVRDARM PRADFLRMFP SNETDQTWSG DLAKRNTKWA AALGEKNAAI VACQQKLIDL ETETGLTVAE IKEINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV ESLKEATRDV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPTRSEHL RSFLDE
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