Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0397 |
Symbol | |
ID | 5194015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 461003 |
End bp | 461926 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640584843 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001265754 |
Protein GI | 148545652 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.7885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTCC GCCAACTGCG TTATTTCGTC GCGGTGTACG AAGAAGGCCA CGTAGGCCGT GCCGCCGAGC GCCTGTCGCT GTCACAGCCG GCGCTTTCCC AGCAGATTCG CCAGTTGGAG CACAGCCTCG ACCTGAGCCT GTTCGAGCGC AGCAACAAAC GCTTGCTGCC GACCCTGGCC GCCCACACCT TGTACAACCA TGCCCTGCCG TTGCTCGACG GCCTGCAGCG TGCCCACGAG GCTATGCGCA ACTTCAAGGG CCAGTCGCTG CGCACCTTGG CTATCGGTGT ATTGCAGACC GTGCGGCCAA GCCTGATACC GCAGCTGCTT GAACGGCTGC GCAAGGCTCA ACCTCACCTG GTCGTGCAGA TTTACGAGTT GTCGGGGTTG GAGATCGAAC GGCGCCTGCT CAATGGCAAC CTGGACATCG GCATCAGCTA CTTGCCGCCG CGCCAGCCAG GGCTGCATGG CCTGCTGTTG TACGAAGATG AGCTGCAACT GGTCATACCC GATACCCACC CGCTGAAGGA CTTCAAGAAG GTGTCCATCC GTCAGGCCGC CGAATTGCCC ATGCTGATGC TGGGCGAAGA GTTCCAGATC CGCCAGATCT GGCAGGCGCA GCTGGCCAGC CAAGGCCGAC GGCCGCAGGT GCAGGCAGAG ATGAACAATA TGGCAGGGAT TCTCGATAGC CTCGCGCACA CGGCGCTGGC TACCATTCTG CCGGGGCGCG CCAAGGAGGC CGCCGAAGAT GATCAGGGGC TGCTGTGGAA GCCGTTGAGC GAGCCGCGCG TGCCATTGAA GGTTGGCCTG GTATTTCGCG ATGCCCAGCG CCAGCAGGCC TCTGTGGAGC TGCTGCGCAC GTTGCTGGAG GAAGAGACGG ACGCTCGCCT GATGGGAGCA TCACCGCTGG ATGTGCTGGC CTAA
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Protein sequence | MDFRQLRYFV AVYEEGHVGR AAERLSLSQP ALSQQIRQLE HSLDLSLFER SNKRLLPTLA AHTLYNHALP LLDGLQRAHE AMRNFKGQSL RTLAIGVLQT VRPSLIPQLL ERLRKAQPHL VVQIYELSGL EIERRLLNGN LDIGISYLPP RQPGLHGLLL YEDELQLVIP DTHPLKDFKK VSIRQAAELP MLMLGEEFQI RQIWQAQLAS QGRRPQVQAE MNNMAGILDS LAHTALATIL PGRAKEAAED DQGLLWKPLS EPRVPLKVGL VFRDAQRQQA SVELLRTLLE EETDARLMGA SPLDVLA
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