Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0380 |
Symbol | |
ID | 5192769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 440260 |
End bp | 442197 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640584826 |
Product | CBS domain-containing protein |
Protein accession | YP_001265737 |
Protein GI | 148545635 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.488205 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCAAAA AGGACGCCTA CAGCCAGGCG GGCAAGACAG CGGTACTGCA AAACATCCAA GGCACATTGC AGTTCCTGCA GCGCTTTCCG CCGTTCAATC AGATGGAGCA CAGCCACCTG GCCTTCTTGG TCGAGCAGTG CCAGCTGCGC TTCTACGCCT GCGGTGAAAG CATCGTCAAA CCTGCCGACG GGCCGGTCGA GCACTTCTAC ATCGTCAAGC AAGGCCGCGT GGTTGGCGAG CGCCAGCACC TGGCCAAACC GGGTGTCGAA ACCACGTTCG AGATCACCAG CGGGGAGTGC TTCCCGCTGG CAGCCCTGCT GGGTGAGCGG GCAACCCGCA CCGAGCACCT GGCCGGGGAA GACACCTTCT GCCTGCAACT GAACAAGGCC GCATTCATCC GCGTGTTCTC GATGTCTGAA GTGTTTCGGG ATTTTGCCCT GCGCGGTGTC AGCAGCCTGC TTGATCAGGT CAATCAGCAA GTACGCCAGC GCGCTGTGGA AACCCTCGGC ACCCAATACT CGCTGAACAC CCCCCTGGGT GAACTGGCCA TGCGTCACCC GGTGGTGTGC AGCGCCCATA CGCCCCTGCG CGAAGCCGTG CGGCTGATGC ACGAGCAACA GGTGGGCAGC ATCGTGGTGG TCGACCCGCA GCGCTACCCC ATCGGTATCT TCACCTTGCG CGACCTGCGC CAGGTGGTGG CGACAGTAGA TGCCGACCTG GGCGCCGCCA TCGACCGGCA CATGACCGCC AAACCGTTCT ACCTCCCACC CCAGGCCAGC GCCTTCGATG CCGCCATGGC CATGACCGAG CGGCATATTG CCCATGTCTG CCTGGTGGAA AACGGACGCC TGTGCGGCGT GGTTTCCGAG CGCGACCTGT TCTCCCTGCA ACGGGTCGAT CTGGTTCACC TGGCGCGCAC CATACGCCAT GCGCCACGCC TGGATACGCT GGTTTCGCTG CGCGGCGAAA TCAGCCAGCT TGTAGAACGC ATGCTGGCCC ATGGCGCATC GTCGACGCAG ATCACCCAGA TCATTACCTT GCTCAACGAC CATACCGTGT GCCGGGTCAT CGAACTGGCC CTGGCCGAAC GTGGCGACCC GGGCGTGCCG TTCAGCTGGC TGTGCTTTGG CAGCGAAGGG CGACGTGAGC AGACCCTGCA CACCGACCAG GACAACGGCA TCCTCTTCGA AGCAGTCGAC AGCGCCGAGG CCGACGCCAT CCGCGCTCGC CTGCTGCCGC TGGCGCAATA CATCAACCAA TGCCTGGCCC AGTGCGGTTT CACCCTGTGC ACGGGTAACG TCATGGCCGG CAACCCCGAA CTGTGCCTGT CGCGCAGCGA GTGGGCGCGG CGCTTTGCCG GGTTTGTCCG CGAAGCCAGC CCGGAGAGCC TGCTGGGCTC GAGCATCTAC TTCGACCTGC GTGTGGTGTG GGGCGACGAG CAAGGCTGCG AGCAACTGCG CCAGGGCCTG CTGGCACAGG TAGCCGACAA CCGCATCTTC CAGCGCATGA TGGCTGACAA CGCCCTGCGC CAACGCCCGC CGGTGGGCCG GTTGCGCGAG TTCGTGCTGA CACGCCAGGG CAACGACAAG GCGGCGACCC TCGACCTCAA GGTCCAGGGC CTGACGCCCT TCGTGGATGG TGCCCGTTTG CTGGCCCTGG CCAATGGCAT AGCAGCCTGC AATACCCTGG AGCGCCTACG CCAACTGGTG GCCAAGGGCG TGATCGAGCC GTTGGACGGC GCCGCCTATG AAGAGGCCTA CCACTTCATC CAGCAAACCC GCATGCAGCA GCACCAACGC CAGATTCGCG ACAACCTGCC TTACTCCAAC CGGCTCGACC CGGACAGCCT CAACCACCTG GACCGGCGCA TCCTGCGCGA GTCGCTGCGC CAGGCTCAGC GCCTGCAAAG CAGCCTGGCC TTGCGGTATC AGCTATGA
|
Protein sequence | MSKKDAYSQA GKTAVLQNIQ GTLQFLQRFP PFNQMEHSHL AFLVEQCQLR FYACGESIVK PADGPVEHFY IVKQGRVVGE RQHLAKPGVE TTFEITSGEC FPLAALLGER ATRTEHLAGE DTFCLQLNKA AFIRVFSMSE VFRDFALRGV SSLLDQVNQQ VRQRAVETLG TQYSLNTPLG ELAMRHPVVC SAHTPLREAV RLMHEQQVGS IVVVDPQRYP IGIFTLRDLR QVVATVDADL GAAIDRHMTA KPFYLPPQAS AFDAAMAMTE RHIAHVCLVE NGRLCGVVSE RDLFSLQRVD LVHLARTIRH APRLDTLVSL RGEISQLVER MLAHGASSTQ ITQIITLLND HTVCRVIELA LAERGDPGVP FSWLCFGSEG RREQTLHTDQ DNGILFEAVD SAEADAIRAR LLPLAQYINQ CLAQCGFTLC TGNVMAGNPE LCLSRSEWAR RFAGFVREAS PESLLGSSIY FDLRVVWGDE QGCEQLRQGL LAQVADNRIF QRMMADNALR QRPPVGRLRE FVLTRQGNDK AATLDLKVQG LTPFVDGARL LALANGIAAC NTLERLRQLV AKGVIEPLDG AAYEEAYHFI QQTRMQQHQR QIRDNLPYSN RLDPDSLNHL DRRILRESLR QAQRLQSSLA LRYQL
|
| |