| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0347 |
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| Symbol | |
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| ID | 5190938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 395548 |
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| End bp | 398562 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640584793 |
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| Product | sarcosine oxidase alpha subunit family protein |
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| Protein accession | YP_001265704 |
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| Protein GI | 148545602 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.584295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.398352 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA CCTATCGCCT CGCCAGCGGC GGCCGTATCG ACCGCAGCAA GGTCCTGAAC
TTCACCTTCA ACGGCAAGAC CTACCAGGGT TATGCCGGTG ACAGCCTGGC CGCCGCGTTG
CTGGCCAACG GCGTCGACAT TGTCGGCCGT AGCTTCAAGT ACTCGCGCCC GCGCGGCATC
ATCGCCGCCG GTACCGAAGA GCCGAACGCC ATCCTGCAGA TCGGCTCCAG CGAAGCTACC
CAGATCCCCA ACGTGCGCGC CACCCAGCAG GCACTGTACG CGGGCCTTGT CGCCACCAGC
ACCAACGGCT GGCCGAACGT CAACAACGAC GTCATGGGCA TCCTCGGCAA GGTAGGCGGC
AGCATGATGC CGCCGGGCTT CTACTACAAA ACCTTCATGT ACCCCAAATC GTTCTGGATG
ACTTACGAGA AGTACATCCG TAAAGCCGCC GGCCTGGGCC GTGCACCGCT GCAGAACGAT
CCTGACAGCT ACGACTACAT GAACCGGCAC TGCGACGTGC TGATCGTCGG CGCCGGCCCT
GCTGGCCTGG CTGCTGCACT GGCCGCTGCG CGCAGCGGTG CCCGCGTGAT CCTGGCTGAC
GAGCAGGAAG AGTTCGGCGG CAGCCTGCTC GACACCCGCG AAACCCTCGA CGGCAAGCCT
GCTGCCGAGT GGGTCAACGC CGTGGTCAAA GAGCTGGAAG GCCTGCCGGA AGTGACCCTG
CTGCCACGTG CCACGGTCAA CGGCTACCAC GACCATAACT TCCTGACCAT TCACGAGCGC
CTCACCGACC ACCTCGGCGA CCGCGCCCCG ATCGGCCAGG TTCGCCACCG CGTGCACCGC
GTCCGCGCCA AGCGCGTGGT ACTGGCTGCC GGCGCCCACG AGCGCCCGCT GGTGTACGGC
AACAACGACG TGCCGGGCAA CATGCTGGCC GGTGCTGTTT CCACCTATGT TCGCCGCTAT
GGCGTGGCGC CGGGTCGCAA GTTGGTACTG TCGACCAACA ACGACCACGC TTACCGCGCC
GCGCTGGACT GGCACGACGC AGGCCTGCAA GTGGTCGCCA TCGCCGACGC CCGCCACAAC
CCACGTGGCT CGCTGGTTGA AGAAGCGCGT GCCAAAGGCA TTCGCATCCT CACCTCCAGC
GCCGTGGTCG AGGCCAAAGG CAGCAAGCAC GTCACCGGCG CCCGTGTGGC GGCGATCGAT
GTGCAGGCAC ACAAAGTCAC CAGCCCAGGC GAAGTCCTCG AGTGCGACCT GATCGCGTCC
TCGGGCGGTT ACAGCCCGAT CGTGCACCTG GCTTCGCACC TGGGCGGTCG CCCGGTATGG
CGTGACGATA TCCTTGGCTT CGTGCCGGGC GATGCGCCGC AGAAGCGTGA GTGCGTCGGT
GGTATCAACG GCGTGTATGC CTTGGGCGAT GTGATTGCCG ATGGCTTCGA AGGCGGCGTC
CGCGCAGCCA CCGAGGCCGG TTTCAAGGCC ACTGTCGGCA CCCTGCCAAA AACCGTGGCG
CGCAAGGAAG AGGCCACCGT GGCACTGTTC CTGGTGCCGC ACGACAAAGG CACCAAGGGG
CCGAAGCAGT TCGTCGACCA GCAGAACGAC GTGACCGCGG CCGGCATCGA GCTGGCCACC
CGTGAAGGCT TCGAGTCGGT CGAGCACGTC AAGCGCTACA CCGCGCTGGG CTTCGGTACC
GACCAGGGCA AACTGGGCAA CATCAACGGC CTGGCCATCG CCGCCCGTTC GATCGGCATC
ACCATCCCGG AAATGGGCAC CACCATGTTC CGCCCCAACT ACACGCCGGT GACGTTCGGC
GCGGTAGCGG GCCGTCACTG TGGTCACCTG TTCGAGCCTG TGCGCTTCAC TGCCCTGCAT
GCCTGGCACG TGAAGAACGG CGCCGAGTTC GAAGACGTCG GCCAGTGGAA GCGCCCGTGG
TACTTCCCGA AAGCCGGCGA AGACATCCAT GCTGCCGTCA CGCGTGAATG CAAGGCCGTG
CGCGACAGCG TGGGCCTGCT GGACGCCTCG ACCCTGGGCA AGATCGACAT CCAGGGCCCG
GACGCGCGCG AATTCCTCAA CCGCATCTAC ACCAACGCCT GGACCAAGCT CGACGTGGGC
AAGGCCCGCT ACGGCCTGAT GTGCAAGGAA GACGGCATGG TCTTCGACGA CGGCGTAACC
GCCTGCGTCG GCGACAACCA CTTCATCATG ACCACCACCA CCGGCGGCGC TGCGCGCGTG
TTGCAGTGGA TGGAGCTGTA TCACCAAACC GAATGGCCAG AGCTGAAGGT GTACTTCACT
TCGGTCACCG ACCACTGGGC CACCATGACC CTGTCCGGCC CTAACAGCCG CAAGCTGCTG
AGCGAGCTGA CCGACATCGA CATGGACAAG GAAGCCTTCC CGTTCATGAC CTGGAAGGAA
GGCAACGTCG GTGGCGTGCC GGCCCGCGTG TTCCGTATCT CGTTCACCGG CGAGCTGTCG
TACGAAGTGA ACGTGCAGGC CAACTACGCC ATGGGCGTGC TGGAACAGAT CATCGAGGCC
GGCAAGAAGT ACAACCTGAC CCCGTACGGC ACCGAGACCA TGCACGTACT GCGTGCAGAG
AAGGGCTTCA TCATCGTGGG CCAGGACACC GATGGTTCGA TGAACCCGGA CGACCTGAAC
ATGAGCTGGT GCGTTGGCCG CAACAAGCCG TTCTCGTGGA TCGGCCTGCG TGGCATGAAC
CGCGAAGACT GCGTACGTGA GAACCGCAAG CAGCTGGTGG GCCTGAAGCC GGTCGACCCG
ACCAAGTGGC TGCCGGAAGG CGCCCAATTG GTGTTCGACC CGAAACAGCC GATCCCGATG
GACATGGTCG GCCACGTCAC CTCCAGCTAC GCCTCCAACT CCCTGGGCTA CTCGTTCGCC
ATGGGTGTGG TCAAAGGCGG CCTCAAGCGC ATGGGCGAGC GTGTCTACTC GCCGCAGGCA
GATGGCAGCG TGATCGAGGC GGAGATCGTG TCTTCGGTGT TCTTCGATCC GAAGGGTGAG
CGGCAGAACG TCTAA
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| Protein sequence | MSQTYRLASG GRIDRSKVLN FTFNGKTYQG YAGDSLAAAL LANGVDIVGR SFKYSRPRGI
IAAGTEEPNA ILQIGSSEAT QIPNVRATQQ ALYAGLVATS TNGWPNVNND VMGILGKVGG
SMMPPGFYYK TFMYPKSFWM TYEKYIRKAA GLGRAPLQND PDSYDYMNRH CDVLIVGAGP
AGLAAALAAA RSGARVILAD EQEEFGGSLL DTRETLDGKP AAEWVNAVVK ELEGLPEVTL
LPRATVNGYH DHNFLTIHER LTDHLGDRAP IGQVRHRVHR VRAKRVVLAA GAHERPLVYG
NNDVPGNMLA GAVSTYVRRY GVAPGRKLVL STNNDHAYRA ALDWHDAGLQ VVAIADARHN
PRGSLVEEAR AKGIRILTSS AVVEAKGSKH VTGARVAAID VQAHKVTSPG EVLECDLIAS
SGGYSPIVHL ASHLGGRPVW RDDILGFVPG DAPQKRECVG GINGVYALGD VIADGFEGGV
RAATEAGFKA TVGTLPKTVA RKEEATVALF LVPHDKGTKG PKQFVDQQND VTAAGIELAT
REGFESVEHV KRYTALGFGT DQGKLGNING LAIAARSIGI TIPEMGTTMF RPNYTPVTFG
AVAGRHCGHL FEPVRFTALH AWHVKNGAEF EDVGQWKRPW YFPKAGEDIH AAVTRECKAV
RDSVGLLDAS TLGKIDIQGP DAREFLNRIY TNAWTKLDVG KARYGLMCKE DGMVFDDGVT
ACVGDNHFIM TTTTGGAARV LQWMELYHQT EWPELKVYFT SVTDHWATMT LSGPNSRKLL
SELTDIDMDK EAFPFMTWKE GNVGGVPARV FRISFTGELS YEVNVQANYA MGVLEQIIEA
GKKYNLTPYG TETMHVLRAE KGFIIVGQDT DGSMNPDDLN MSWCVGRNKP FSWIGLRGMN
REDCVRENRK QLVGLKPVDP TKWLPEGAQL VFDPKQPIPM DMVGHVTSSY ASNSLGYSFA
MGVVKGGLKR MGERVYSPQA DGSVIEAEIV SSVFFDPKGE RQNV
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