Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0260 |
Symbol | |
ID | 5191382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 301830 |
End bp | 304154 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640584705 |
Product | RNA-binding S1 domain-containing protein |
Protein accession | YP_001265618 |
Protein GI | 148545516 |
COG category | [K] Transcription |
COG ID | [COG2183] Transcriptional accessory protein |
TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.217676 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAGCA TCAACAGCCG TATCGCCGAG GAACTGGGCG TACGCCCGCA GCAGGTCGAG GCGGCCGTGA GCCTGTTGGA CGAAGGCTCG ACCGTGCCCT TCATCGCCCG CTACCGCAAG GAAGTGACCG GTAGCCTTGA CGACACTCAG TTGCGCCACC TGGAAGAGCG CCTGCGCTAC CTGCGCGAAC TCGACGAGCG CCGCGCCAGC ATCCTTTCCA GTATCGAGGA ACAGGGCAAG CTGACCCCGG AACTGGCCCG CGAGATCAAG CTGGCCGACA CCAAGACCCG CCTCGAAGAC CTTTACCTGC CCTACAAGCA GAAACGCCGC ACCAAGGGCC AGATCGCCCT GGAAGCCGGC CTCGGCGAAC TGGCCGATGG CCTGTTCAAC GACCCGACCC TGGCCCCGGA AAGCGAAGCC GCACGCTTCG TCAACGTCGA AAAGGGCGTG GCCGACGTCA AGGCCGCGCT GGAAGGCGCC AAATACATCC TGATGGAGCG CTTTGCCGAA GACGCCGCCC TGCTCGACAA GCTGCGCAGC TATCTCAAGC AGGAAGCCGT GCTCAGCGCC CGCGTCGTGG CTGGCAAGGA AGAAGAAGGC GCCAAGTTCC GCGACTACTT CGCTCATGAC GAGCTGCTGC GCACGGCGCC ATCGCACCGT GCCCTGGCGA TCTTCCGCGG GCGCAACGAA GGCGTGTTGA GCGTCTCGCT GAAGGTCGGC GAAGAACTGC CCGGCACCCT GCACCCGTGC GAACTGATGA TCGGCAACCA CGTCGGCATC GAAAACCGCA GCCGACCCGC CGACAAGTGG CTGGGAGAAG TGGTGCGCTG GACCTGGAAG GTCAAGCTGT ACACCCACCT GGAAACCGAC CTGTTCGGCG AGCTGCGTGA CAATGCCGAA GGCGAGGCGA TCAACGTGTT CGCCCACAAC CTGCACGATC TGCTGCTGGC CGCCCCGGCC GGTCCGCGCG CCACCCTGGG CTTCGACCCA GGCCTGCGTA CGGGCTGCAA GATCGCCGTG GTCGACGCAA CCGGCAAACT GCTGGACCAC ACCACGGTCT ACCCGCACGC GCCGAAGAAC GACTGGGACC GCACCATTTC CATCATGGCC GCACTGTGCG CCAAACACTC GGTGGAGCTG ATCGCCATCG GCAACGGTAC CGCCAGCCGC GAAAGCGACA AGCTGGTGGC CGAGCTGGTC AAGAAATATC CAGCCCTGAA AATCACCAAG ATCATGGTCT CCGAAGCCGG TGCTTCGGTG TACTCGGCAT CGGAACTGGC CGCCCGCGAG TTCCCGGACC TGGACGTGTC GATCCGCGGC GCCGTGTCGA TCGCCCGCCG CCTGCAGGAT CCGCTGGCCG AACTGGTGAA GATCGATCCG AAATCAATCG GTGTCGGCCA GTACCAGCAC GACGTGTCCC AGCTGAAACT GGCACGTGGC CTGGACGCGG TGGTCGAGGA CTGTGTGAAC GCCGTGGGCG TGGACGTGAA CACCGCTTCG GTGGCGCTGC TGACGCGCAT CTCCGGCCTC AATGCCACGC TGGCACAGAA CATCGTCGCC CACCGCGATG CCAATGGTCC GTTTGCCACC CGTGCAGCGC TGAAAAAGGT TAGCCGCCTG GGTGAGAAAA CCTTCGAGCA GGCCGCCGGC TTCCTGCGTG TGATGAACGG CGACAACCCG CTGGACGCCT CTGCGGTGCA CCCTGAGGCT TACCCGCTGG TGCAGCGCAT TGCTGCCGAT ACCGACCGCG ACATCCGCTC GCTGATTGGT GACAGCAGCT TCCTCAAGCG CCTGGACCCG AAAAAGTTCA CCGACGAAAC CTTCGGCCTG CCAACTGTCA CCGACATCCT GCAAGAGCTG GACAAGCCCG GCCGCGACCC GCGTCCGGAG TTCAAGACCG CCACCTTCCA GGACGGCGTC GAAGACCTCA AGGACCTGGA ACCGGGCATG ATCCTCGAAG GCGTGGTGAC CAACGTTACC AACTTCGGTG CCTTCGTCGA CATCGGCGTG CACCAGGACG GCCTGGTGCA TATCTCGGCG CTGTCGGAGA AGTTCGTCAA AGACCCGCGT GAAGCGGTCA AGGCCGGCGA TGTGGTCAAG GTCAAGGTCA TGGAAGTGGA CATCCCGCGC AAACGCGTCG GCCTGTCCAT GCGCATGAGC GACACCCCGG GCGAGAAGGT CGAAGGCAAC CGCGGTGGTA ACCGCGGCAA TGGTGGCAGC CGCCAGCAGC AGGCACCGCG CCAGCGTGAA ACCGCCACGG CTGCGCCGGC CAACAACGCC ATGGCCTCGC TGTTCGCCAA CGCCAAGCAA TTGAAGAAGA AGTAA
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Protein sequence | MDSINSRIAE ELGVRPQQVE AAVSLLDEGS TVPFIARYRK EVTGSLDDTQ LRHLEERLRY LRELDERRAS ILSSIEEQGK LTPELAREIK LADTKTRLED LYLPYKQKRR TKGQIALEAG LGELADGLFN DPTLAPESEA ARFVNVEKGV ADVKAALEGA KYILMERFAE DAALLDKLRS YLKQEAVLSA RVVAGKEEEG AKFRDYFAHD ELLRTAPSHR ALAIFRGRNE GVLSVSLKVG EELPGTLHPC ELMIGNHVGI ENRSRPADKW LGEVVRWTWK VKLYTHLETD LFGELRDNAE GEAINVFAHN LHDLLLAAPA GPRATLGFDP GLRTGCKIAV VDATGKLLDH TTVYPHAPKN DWDRTISIMA ALCAKHSVEL IAIGNGTASR ESDKLVAELV KKYPALKITK IMVSEAGASV YSASELAARE FPDLDVSIRG AVSIARRLQD PLAELVKIDP KSIGVGQYQH DVSQLKLARG LDAVVEDCVN AVGVDVNTAS VALLTRISGL NATLAQNIVA HRDANGPFAT RAALKKVSRL GEKTFEQAAG FLRVMNGDNP LDASAVHPEA YPLVQRIAAD TDRDIRSLIG DSSFLKRLDP KKFTDETFGL PTVTDILQEL DKPGRDPRPE FKTATFQDGV EDLKDLEPGM ILEGVVTNVT NFGAFVDIGV HQDGLVHISA LSEKFVKDPR EAVKAGDVVK VKVMEVDIPR KRVGLSMRMS DTPGEKVEGN RGGNRGNGGS RQQQAPRQRE TATAAPANNA MASLFANAKQ LKKK
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