| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0084 |
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| Symbol | def |
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| ID | 5195177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 90511 |
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| End bp | 91017 |
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| Gene Length | 507 bp |
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| Protein Length | 168 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640584525 |
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| Product | peptide deformylase |
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| Protein accession | YP_001265443 |
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| Protein GI | 148545341 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.424252 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATCT TGAACATTCT CGAATTCCCG GACCCGCGCC TGCGCACCCT CGCCAAACCG
GTGACGGAGT TCGACGACGC CCTGCGTCAG CTGATCGACG ACATGTTTGA AACCATGTAC
GAAGCCCCTG GCATCGGCCT GGCCGCTACC CAGGTGAACG TGCACAAGCA GGTTGTGGTC
ATGGACCTCA GCGAAGACCG CAGCGAACCG CGCGTCTTCA TCAACCCGTC GGTCGAAGAG
CTGACCCATG ACATGGGCCA GTACCAGGAG GGCTGCCTGT CGGTACCGGG CTTCTACGAG
AACGTCGACC GTCCGCTGCG TGTCCGGGTC AAGGCCCAGG ACCGCGACGG CAAGCCATTC
GAACTGGAAT GCGAAGGCCT GCTGGCGGTG TGCGTACAGC ACGAATTCGA TCACCTCAAC
GGCAAGCTGT TCGTCGACTA CCTGTCGCAG CTCAAGCGCG ACCGGATCAA GAAGAAGCTG
GAAAAGCAGC ATCGCCAGCA AGCCTGA
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| Protein sequence | MAILNILEFP DPRLRTLAKP VTEFDDALRQ LIDDMFETMY EAPGIGLAAT QVNVHKQVVV
MDLSEDRSEP RVFINPSVEE LTHDMGQYQE GCLSVPGFYE NVDRPLRVRV KAQDRDGKPF
ELECEGLLAV CVQHEFDHLN GKLFVDYLSQ LKRDRIKKKL EKQHRQQA
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