Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0082 |
Symbol | |
ID | 5190350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 88211 |
End bp | 89521 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640584523 |
Product | sun protein |
Protein accession | YP_001265441 |
Protein GI | 148545339 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.254701 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCCAC GCCTCGCCGC CGCCCGTGCG CTTGCTGCTG TGCTCAGCGG CAAGGCTTCG CTGAACAGCT CGCTGCCGGC GCAACTGGAC AAGGTAGATG AACGCGACCG CGGCCTGACC CAAGACCTGG CGTTCGGCAC CGCACGCTGG CAGCCACGCC TCGACCTGCT GGCCGCACAG CTGCTGCAAA AACCCTTCAA AGCAGCCGAT GCCGATGTTC AGGCGCTGCT GCTGGTCGGC CTGTACCAGC TGTTCTACAC GCGCATTCCG GCCCATGCCG CCATCGGCGA GACCGTGGGC TGTGCCGACA AACTGAAGAA GCCGTGGGCC AAGGGCCTGC TCAATGCCGT ACTGCGCCGT GCACAGCGCG AAGGCGAGGA GCTGCTCGCC GGCATGGAGC GCGACCCGGT GGTGCGTACC GCGCACCCGC GCTGGCTGCA AAAAGCGCTG AAAGCTTTCT GGCCAGAGCA GTGGGAAGCC ATCTGCGCCG CCAACAATGC CCACCCACCG ATGATTCTGC GGGTCAATCG CCGTCACCAT AGCCGCGATG CCTACCTGGC ACTGCTGGCC GAAGCCGGCA TCGGCGCCAG CGCATGCCAG TACAGCCGGG ATGGCATCGT GCTGGCCGAA GCCTGCGACG TGCGCGGCCT GCCAGGCTTC GCCGAAGGCT GGGTGAGCGT GCAGGACGAA GCTGCGCAGC TATCTGCCGA CCTGCTGGAA CTGGCCCCCG GTCAACGCGT GCTCGATGCT TGCTGCGCAC CGGGCGGCAA AACCTGCCAC CTGCTGGAGG CCGAGGCTGG CCTGGCGCAC ATGGTGGCCA TCGATCTCGA AGCCAAGCGG CTGACCCGCG TGCGAGAAAA CCTCGACCGC CTGCAGCTGG ACGCCGAGCT GATCGCCTGC GATGCCCGCG ACACTGCCAG CTGGTGGGAC GGCAAGCCAT TCCAGCGCAT TCTGCTCGAC GCGCCGTGCT CGGCCACCGG CGTGATTCGC CGCCACCCGG ACATCAAGCT GACCCGCCAA GCCGACGACA TCCCGGCTTT GGCCACGCTG CAAGGCGAGC TGCTCGATGC CCTGTGGCCG ACCTTGGAAG TGGGCGGCAT GCTGCTATAC GCCACCTGCT CCAGCTTGCC GACCGAAAAC ACTGAAGTGA TCAAAGCCTT CCTCGCCCGC ACCCCGGGCG CCCGTGAGCT GGACCTGGCG ACCGAAGCCG GCCTGCGCCA GCCCCACGGC CGTCAGCTGC TGGCCCAGGA AGGCGGTCAC GACGGTTTCT ACTATGCCAA GCTGATCAAG ATCGCCGCCT CGCGCGGATA A
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Protein sequence | MNPRLAAARA LAAVLSGKAS LNSSLPAQLD KVDERDRGLT QDLAFGTARW QPRLDLLAAQ LLQKPFKAAD ADVQALLLVG LYQLFYTRIP AHAAIGETVG CADKLKKPWA KGLLNAVLRR AQREGEELLA GMERDPVVRT AHPRWLQKAL KAFWPEQWEA ICAANNAHPP MILRVNRRHH SRDAYLALLA EAGIGASACQ YSRDGIVLAE ACDVRGLPGF AEGWVSVQDE AAQLSADLLE LAPGQRVLDA CCAPGGKTCH LLEAEAGLAH MVAIDLEAKR LTRVRENLDR LQLDAELIAC DARDTASWWD GKPFQRILLD APCSATGVIR RHPDIKLTRQ ADDIPALATL QGELLDALWP TLEVGGMLLY ATCSSLPTEN TEVIKAFLAR TPGARELDLA TEAGLRQPHG RQLLAQEGGH DGFYYAKLIK IAASRG
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