Gene Pput_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0002 
Symbol 
ID5190870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1943 
End bp3046 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content59% 
IMG OID640584445 
ProductDNA polymerase III subunit beta 
Protein accessionYP_001265363 
Protein GI148545261 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.123405 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0743731 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATTTCA CCATTCAACG CGAAGCCCTG TTGAAACCCC TGCAACTGGT CGCCGGTGTC 
GTCGAGCGCC GTCAGACCTT GCCGGTCCTG TCCAACGTAT TGCTGGTCGT ACAAGGCCAG
CAACTGTCGT TGACCGGTAC CGACCTGGAA GTCGAGCTGG TAGGCCGCGT GCAACTGGAA
GAGCCGGCCG AGCCTGGCGA GATCACTGTT CCGGCGCGCA AGCTGATGGA CATCTGCAAA
AGCCTGCCTA ACGACGCCCT GATCGATATC AAGGTCGATG AGCAGAAATT GTTGGTAAAG
GCCGGCCGCA GCCGCTTCAC CCTGTCGACC CTGCCTGCCA ATGACTTCCC GACTGTGGAA
GAAGGCCCGG GTTCGCTGAC CTGCAACCTG GAGCAGAGCA AGCTGCGCCG CCTGATCGAG
CGAACCAGCT TCGCCATGGC CCAGCAGGAT GTGCGCTATT ACCTCAACGG CATGCTGCTT
GAGGTTTCCC GCAACACGTT GCGGGCCGTA TCCACCGACG GTCACCGCTT GGCGCTTTGC
TCGATGAGCG CGCCGATCGA GCAGGAGGAT CGACACCAGG TCATCGTGCC GCGTAAAGGT
ATCCTGGAGT TGGCGCGCCT GCTGACCGAT CCTGAAGGTA TGGTCAGCAT CGTGCTGGGC
CAGCATCACA TCCGCGCCAC TACTGGCGAG TTCACCTTTA CCTCCAAGCT GGTGGACGGC
AAGTTCCCGG ACTACGAGCG CGTACTGCCC AAAGGCGGTG ACAAGCTGGT TGTCGGAGAC
CGCCAGGCGC TGCGTGAAGC TTTCAGCCGT ACTGCGATTC TTTCCAACGA AAAGTACCGC
GGTATTCGCC TGCAACTGGC TGCCGGTCAA CTGAAGATCC AGGCTAACAA CCCTGAGCAG
GAAGAAGCTG AAGAAGAAAT CAGCGTGGAC TACGAAGGTA GCTCGCTGGA GATTGGTTTC
AACGTCAGCT ACTTGCTGGA CGTGCTGGGC GTGATGACTA CTGAGCAAGT TCGTCTGATC
TTGTCCGATT CAAACAGCAG TGCGCTGCTG CAGGAAGCTG GCAATGACGA TTCTTCCTAC
GTTGTCATGC CGATGCGCCT GTAA
 
Protein sequence
MHFTIQREAL LKPLQLVAGV VERRQTLPVL SNVLLVVQGQ QLSLTGTDLE VELVGRVQLE 
EPAEPGEITV PARKLMDICK SLPNDALIDI KVDEQKLLVK AGRSRFTLST LPANDFPTVE
EGPGSLTCNL EQSKLRRLIE RTSFAMAQQD VRYYLNGMLL EVSRNTLRAV STDGHRLALC
SMSAPIEQED RHQVIVPRKG ILELARLLTD PEGMVSIVLG QHHIRATTGE FTFTSKLVDG
KFPDYERVLP KGGDKLVVGD RQALREAFSR TAILSNEKYR GIRLQLAAGQ LKIQANNPEQ
EEAEEEISVD YEGSSLEIGF NVSYLLDVLG VMTTEQVRLI LSDSNSSALL QEAGNDDSSY
VVMPMRL