Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_5212 |
Symbol | trmE |
ID | 6114214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 5770200 |
End bp | 5771570 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641625035 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_001752056 |
Protein GI | 170724368 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACACTG TGCGTGAAAC CATCGCTGCC ATCGCAACCG CACAAGGACG CGGAGGAGTA GGCATTGTCA GGCTATCCGG CCCGCTGGCG GCCAAGGCTG GCCAGCTCAT CACTGGGCGC ACACTGACGC CGCGCCATGC CCATTACGGC CCATTCCGCG ACCAGGAAGG GCTGGTACTG GATGAAGGTA TTGCGCTGTT CTTCCCCGGA CCCAACTCTT TCACCGGTGA GGACGTGCTC GAGTTGCAGG GGCACGGAGG CCCGGTCGTA CTGGACATGC TGTTGCAACG CTGCGTGCAG GTGGGTTGCC GTCTGGCCCG CCCGGGTGAG TTCAGTGAGC GGGCGTTCCT CAACGACAAG CTCGACCTGG CCCAGGCCGA AGCGATTGCC GACCTGATCG AAGCCAGCTC CAGCCAGGCA GCACGCAATG CCCTGCGCTC GTTGCAAGGG GAGTTCTCCA AGCGTGTGCA CAGCCTGACT GAAGCTCTGA TCGCGCTGCG GATCTATGTC GAGGCAGCGA TCGACTTCCC GGAGGAGGAA ATCGACTTTC TTGCCGATGG CCATGTCCTG TCGATGCTCG ACTCAGTGCG TGCCGAGTTG TCCACAGTGC AGCGTGAGGC CGGGCAGGGT GCGCTGCTTC GTGATGGCAT GACGGTAGTG ATCGCCGGCA GGCCTAATGC AGGTAAATCG AGCCTGTTGA ATCAATTGGC CGGCCGTGAG GCGGCAATCG TCACCGCCAT TGCGGGTACG ACGCGGGATA TCCTGCGTGA ACATATCCAC ATCGATGGCA TGCCGCTGCA CGTCGTCGAT ACGGCCGGGT TGCGCGACAC CGACGACCAT GTGGAAAAGA TAGGCGTCGA GCGCGCCCTG AAGGCCATAG GCGAAGCCGA CAGAGTGTTG TTGGTGGTCG ACTCCACCGC CCCTGAGGCC AGTGATCCGT TCGCCCTGTG GCCGGAGTTT CTTGATCAAA GGCCTGATCC GGGCAAGGTC ACACTGATTC GCAACAAAGC CGACCTCAGC GGCGAACCCG TAGGGCTGGA ACAGTGCGAT GACGGTCATG TAACCATCAC CTTGAGCGCC AAAGGTGACG ATCAGGGCCT GCTGCTGTTA CGCGATCACC TCAAAGCCTG CATGGGTTAT GAACAGACTG CAGAGAGTGG CTTCAGCGCA CGCCGGCGGC ACCTTGATGC CCTGCGCCAG GCCTGTGCGC ATCTGGAGCA CGGTCGTGCG CAGTTGACCT TGGCGGGGGC TGGAGAGCTT TTGGCTGAGG ACCTGCGCCA GGCTCAGCAC GCGCTGGGGG AGATCACGGG CGCGTTCAGT TCGGATGACC TGCTGGGGCG AATCTTCTCG AGTTTCTGCA TCGGTAAGTA G
|
Protein sequence | MNTVRETIAA IATAQGRGGV GIVRLSGPLA AKAGQLITGR TLTPRHAHYG PFRDQEGLVL DEGIALFFPG PNSFTGEDVL ELQGHGGPVV LDMLLQRCVQ VGCRLARPGE FSERAFLNDK LDLAQAEAIA DLIEASSSQA ARNALRSLQG EFSKRVHSLT EALIALRIYV EAAIDFPEEE IDFLADGHVL SMLDSVRAEL STVQREAGQG ALLRDGMTVV IAGRPNAGKS SLLNQLAGRE AAIVTAIAGT TRDILREHIH IDGMPLHVVD TAGLRDTDDH VEKIGVERAL KAIGEADRVL LVVDSTAPEA SDPFALWPEF LDQRPDPGKV TLIRNKADLS GEPVGLEQCD DGHVTITLSA KGDDQGLLLL RDHLKACMGY EQTAESGFSA RRRHLDALRQ ACAHLEHGRA QLTLAGAGEL LAEDLRQAQH ALGEITGAFS SDDLLGRIFS SFCIGK
|
| |