| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4975 |
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| Symbol | |
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| ID | 6113967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5493329 |
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| End bp | 5494294 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641624789 |
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| Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
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| Protein accession | YP_001751820 |
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| Protein GI | 170724132 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000230006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00807974 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCACAG TCTTCTTGCG TCGTGGTCTG GTCGCCCTGT TTGCGGCGGC TGTGTCCTTC
GGCGCCATTA CCCAAGCCCA GGCTGAAAGC CTGCGTATCG GCTATCAGAA ATACGGCACC
CTGGTGCTGC TCAAAGCCAA GGGCACGCTG GAAAAGCGCC TGGCCGATCA GGGCATCCAG
GTGCAATGGA CCGAATTCCC CGGTGGCCCG CAGCTGCTCG AAGGCTTGAA TGTCGGCTCC
ATCGACTTTG GCGTAACTGG TGAAACGCCG CCGGTATTCG CTCAGGCCGC CGGTGCCGAT
CTGCTCTATG TGGCCTACGA ACCGCCTGCG CCGCACAGTG AAGCGATCCT TGTACCGAAG
GGTTCGCCGA TCCAGTCGGT GAAGGAACTC AAAGGCAAGA AAGTTGCGCT CAACAAAGGT
TCGAACGTTC ACTACCTGCT GGTCCGCGCC CTGGAAGAGG CCGGCCTCAA GTACAGCGAT
ATACAGCCCG TCTACCTGCC GCCGGCCGAT GCCCGCGCCG CGTTCGAGCG TGGCAGCGTC
GATGCCTGGG TGATCTGGGA CCCGTACCAG GCCGCCGCCG AACAGCAGCT GCAGGCACGC
ACCCTGCGTG ACGGCAAAGA CCTGGTCGAC AACCACCAGT TCTACCTGGC CACCCGCAAC
TACGCGACCC AGCATCCGGC TGTGATCAAC GCCCTCATCG AAGAAGTACG CGCCGTGGGC
AAATGGTCGC AGGCCAACCC GCAGGAAGTG ACCGACCAGG TCGCTCCGCT GCTCGGGCTG
CCTGCCGACA TCACCCTGAC TTCGGTCAAG CGCCAAGGCT ACGGTGCCGC GCCGCTGACC
CCCGAGGTGG TGGCCGCACA ACAGAAAATC GCCGACACCT TCCAGGCGCT GAAGCTGATT
CCCAAGCCGC TGAGCATCAA GGACGTGATC TGGACACCCC CGGCCAAGGT CGCCAGCGCG
CCTTGA
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| Protein sequence | MRTVFLRRGL VALFAAAVSF GAITQAQAES LRIGYQKYGT LVLLKAKGTL EKRLADQGIQ
VQWTEFPGGP QLLEGLNVGS IDFGVTGETP PVFAQAAGAD LLYVAYEPPA PHSEAILVPK
GSPIQSVKEL KGKKVALNKG SNVHYLLVRA LEEAGLKYSD IQPVYLPPAD ARAAFERGSV
DAWVIWDPYQ AAAEQQLQAR TLRDGKDLVD NHQFYLATRN YATQHPAVIN ALIEEVRAVG
KWSQANPQEV TDQVAPLLGL PADITLTSVK RQGYGAAPLT PEVVAAQQKI ADTFQALKLI
PKPLSIKDVI WTPPAKVASA P
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