Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4815 |
Symbol | |
ID | 6113804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 5307547 |
End bp | 5309397 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641624626 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001751660 |
Protein GI | 170723972 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCG CGGTCGTGAG CAGGGCTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCT GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT GCTCCGGATG CGGATGCCCT TCTGTTGGCG GAAGCCGACA CCGACGAAGC CGCGGCCGAA GAAGCCGCTG CTGCGTTGGC GGCCGTTGAA ACCGATATCG GCCGCACGAC CGACCCTGTG CGCATGTATA TGCGCGAAAT GGGTACTGTC GAGCTCCTGA CCCGCGAAGG CGAAATCGAA ATCGCCAAGC GTATCGAGGA AGGCATCCGT GAAGTGATGG GCGCTATTGC CCACTTCCCG GGCACAGTTG ACTACATCCT CGGTGAATAC GACCGCGTCA CCACCGAAGG TGGCCGCCTG TCCGATGTTC TCAGCGGTTA CATCGACCCT GACGACAATA TTGCCGCTCC GACCGAAGAG GTGCCGATCC CTGGCGCCAA GGCCGCAGCC GCGAAGGAAG AGGCCGACGA CGAGGAAGAA AGCGACGATA GCAGTGACGA TGAGGAAGAG ACCGAAAGCG GTCCGGACCC AGTCGTTGCA GCCCAGCGTT TCGGCGCGGT GTCGGATCAG CTCGCCATCA CCCTCAAGGT GCTGAAAAAG CATGGCCGCA GCCACGCCGA GAGCATCGGT GCAATGCAGG CCCTGGCCGA TCTGTTCATG CCGATCAAGC TGGTGCCCAA GCAGTTCGAC GTACTGGTAG AGCGCGTTCG CGATGCCCTG GCCCGCCTGC GTCAGCAAGA GCGTGCCATC ATGCAACTGT GCGTGCGTGA TGCGCGCATG CCGCGTGCCG ACTTCCTGCG CCTGTTCCCG AGCAACGAGA CCGACCAGAC CTGGAGCGGT GACCTGGCCA AGCGCAACAC CAAATGGGCT GCTGCCCTGG GTGAAAAGGA CGCCGCCATC GTCGCCTGCC AGCAAAAGTT GATCGACCTT GAGACCGAGA CCGGCCTGAC CGTTGCCGAG ATCAAGGACA TCAACCGCCG CATGTCCATC GGTGAGGCCA AGGCCCGCCG CGCCAAGAAA GAAATGGTCG AGGCGAACCT GCGTCTGGTG ATCTCCATCG CCAAGAAGTA CACCAACCGC GGCCTGCAGT TCCTCGACCT GATTCAGGAA GGCAACATCG GCCTGATGAA AGCGGTGGAC AAGTTCGAAT ACCGTCGCGG TTACAAGTTC TCGACCTACG CCACCTGGTG GATTCGTCAG GCGATTACCC GCTCGATCGC CGACCAGGCA CGCACCATCC GTATCCCGGT GCACATGATC GAGACGATCA ACAAGCTCAA CCGCATTTCC CGGCAGATGC TGCAGGAAAT GGGTCGCGAA CCGACCCCGG AAGAGCTCGG TGAGCGCATG GAGATGCCTG AGGACAAAAT CCGCAAGGTC CTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA TGAAGATTCG CACCTGGGCG ATTTCATCGA GGACTCGACC ATGCAGTCCC CGATCGACGT GGCCACGGTC GAAAGCCTCA AGGAAGCGAC CCGCGACGTG CTTTCGGGCC TGACCGCACG CGAAGCCAAG GTGCTGCGCA TGCGTTTCGG TATCGACATG AACACCGACC ACACCCTCGA AGAAGTGGGC AAGCAGTTCG ACGTGACCCG TGAACGGATC CGTCAGATCG AAGCGAAGGC GTTGCGCAAA TTGCGCCACC CGACGCGCAG CGAGCACCTG CGATCTTTCC TCGACGAGTG A
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Protein sequence | MSGKAQQQSR IKELITRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE IAKRIEEGIR EVMGAIAHFP GTVDYILGEY DRVTTEGGRL SDVLSGYIDP DDNIAAPTEE VPIPGAKAAA AKEEADDEEE SDDSSDDEEE TESGPDPVVA AQRFGAVSDQ LAITLKVLKK HGRSHAESIG AMQALADLFM PIKLVPKQFD VLVERVRDAL ARLRQQERAI MQLCVRDARM PRADFLRLFP SNETDQTWSG DLAKRNTKWA AALGEKDAAI VACQQKLIDL ETETGLTVAE IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV ESLKEATRDV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPTRSEHL RSFLDE
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