Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4784 |
Symbol | |
ID | 6113773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 5271680 |
End bp | 5273569 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641624595 |
Product | outer membrane autotransporter |
Protein accession | YP_001751629 |
Protein GI | 170723941 |
COG category | [I] Lipid transport and metabolism [R] General function prediction only |
COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.336852 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGAAAAG CACCTTTGCT ACGTTTTACC TTGGCTACGT TGGCGCTCGC CTGCAGCCAG GCTTTCGCAG CCCCCTCGCC TTACTCGACA ATGATCGTCT TCGGCGACAG CCTCAGCGAT GCCGGGCAAT TTCCTGACCT GACCGGCGGT ACTGCCGGTA TGCGCTTTAC CAACCGTGAT GAGAATGGCA ACTTTGCACC TGTCTCGCCG ATGATCCTCG GCGCACGCCT GGGTGTGAAT CCGGATGAGC TCAACCCATC CACATCATTC GGAATACGCC CCGACGGCAA CAACTGGGCC GTTGGCGGCT ACACCACGCA GCAGATCCTG GATTCGATCA CCACCACTTC CGAGACAGTC ATTCCGCCAG GCCAACCTTT TGCCGGCCTG GTACTACGCG ACAAGCCCGG CTATCTGGCC AATGGCTTGC GCGCAGACCC CAATGCCCTC TACTACCTGA CCGGTGGCGG CAACGACTTC CTGCAAGGCC TGGTGAGCAG CCCTGCCGAT GCCGCCGCTG CGGGATCGCG CCTGGCAGCC AGCGCCCAGG CCCTGCAACA AGGTGGCGCC CGCTACATCA TGGTCTGGCT GCTACCCGAC CTCGGCCAGA CGCCGAACTT CAGTGGCACC CCGCAGCAAA ACGCCCTGTC GCAACTGTCC AGCGTGTTCA ACCAGTCACT GGTCAGCCAA CTGGGCCAGA TCGATGCCGA AATCATTCCA CTGAACATTC CCGTACTGCT GAACGAAGCA CTGGCCAGCC CGACGCAATT CGGCCTGGCC AGCGGGCAGA ATCTGGTCGG CACCTGCTAC AGCGGCAACA GTTGCGTGGA AAACCCACTG TACGGCATCA ATGGCACCAC ACCCGACCCC ACCAAGCTGC TGTTCAACGA CTCGGTACAC CCGACCATCG CCGGCCAGCA ACTGATTGCC GACTACGGCT ACTCGATCCT TTCCGCACCC TGGGAGCTGA CGCTGCTGCC GGAAATGGCC CACGCCAGCC TGCGTGCGCA TCAGGACGAA CTACGTAATC AATGGCAGGC ACCCTGGCAA GCGGCTGGCC AATGGCAGGC CTTCGTTGCC ACCGGTGCGC AAGATCTGGA CCTCGACGGG GGGCGTACTT CTGCCGACGC TGACGGGCGC GGCTACAACC TCACGCTGGG TGGCAGCTAC CGGCTCAACG ACACCTGGCG CGTAGGGCTT GCCGGCGGTA TCTATCGCCA GAAACTGGAG GCAGGAGAAC AAGACTCGGA CTACAAGCTG GACAGCTACC TGGCCAGTGC CTTCGCCCAG TTTCGTAAGG ACCGCTGGTG GGCCGACGCA GCGCTGAGTG CTGGGCACCT GGATTACCAG GACCTCAAGC GCACCTTCGC CCTGGGCGTG AATGACCGAA GTGAGAAAGG TGATACTGAC GGCGAAGCCT GGGCTGTGAC CGGCCGACTG GGATACAACC TGGCAGCCGA TAGCAGTCGC TGGCAGCTGG CGCCGTTCAT CAGCGCCGAC TACGCGCGGG TGAAGGTGGA CGGTTATGAC GAGAAGAGCG GACGTTCGAC GGCACTGGGC TTCGATGACC AGGAACGCAC TTCGCGTCGT TTGGGTCTAG GGTTGCAGGG CAGCGTGCAG GTACTGGCCA ACACCAGGCT GTTTGCCGAG GTGGCGCAGG AGCATGAGTT CGAGGATGAC CAACAGGATG TGACGATGCA CCTGACGACA CTGCCAGCCA ATGACTTCAC GCTAACCGGG TACACACCGC AGAGCAATCT GACACGCGCC AGCCTTGGGC TGAGCCATGA GCTCGCAGCG GGGGTGCAAC TGCGCGGGAA CTACAACTGG CGCAAGAGCG ATGAGTTGAC CCAGCAAGGC ATAAGCCTGG GCGTCAGCGT CGACTTTTAA
|
Protein sequence | MRKAPLLRFT LATLALACSQ AFAAPSPYST MIVFGDSLSD AGQFPDLTGG TAGMRFTNRD ENGNFAPVSP MILGARLGVN PDELNPSTSF GIRPDGNNWA VGGYTTQQIL DSITTTSETV IPPGQPFAGL VLRDKPGYLA NGLRADPNAL YYLTGGGNDF LQGLVSSPAD AAAAGSRLAA SAQALQQGGA RYIMVWLLPD LGQTPNFSGT PQQNALSQLS SVFNQSLVSQ LGQIDAEIIP LNIPVLLNEA LASPTQFGLA SGQNLVGTCY SGNSCVENPL YGINGTTPDP TKLLFNDSVH PTIAGQQLIA DYGYSILSAP WELTLLPEMA HASLRAHQDE LRNQWQAPWQ AAGQWQAFVA TGAQDLDLDG GRTSADADGR GYNLTLGGSY RLNDTWRVGL AGGIYRQKLE AGEQDSDYKL DSYLASAFAQ FRKDRWWADA ALSAGHLDYQ DLKRTFALGV NDRSEKGDTD GEAWAVTGRL GYNLAADSSR WQLAPFISAD YARVKVDGYD EKSGRSTALG FDDQERTSRR LGLGLQGSVQ VLANTRLFAE VAQEHEFEDD QQDVTMHLTT LPANDFTLTG YTPQSNLTRA SLGLSHELAA GVQLRGNYNW RKSDELTQQG ISLGVSVDF
|
| |