| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4670 |
|---|
| Symbol | |
|---|
| ID | 6113651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5156543 |
|---|
| End bp | 5159122 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 859 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641624476 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_001751519 |
|---|
| Protein GI | 170723831 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.425963 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0849008 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATT GGCAATCCCT CGATCCCGAG GCCGCTCGCG AAGCGGAAAA ATACGACAAC
CCTATCCCCA GCCGTGAGCT GATCCTGCAG CGCCTTGCCG ACCGTGGCGA ACCGGCCGCG
CGCGAGGAGC TGGCGGCCGA GTTCGGTCTT TACGAAGAAG ACCAGATCGA AGCCCTGCGC
CGTCGCCTGC GCGCCATGGA GCGTGACGGC CAGCTTATCT ATACCCGGCG CGGCACCTAT
GCCCCGGTAG ACAAACTGGA CCTGATCTGC GGCCGTATCT CCGGCCACCG CGATGGTTTC
GGTTTTCTTA TTCCTGACGA TGGCAGCGAC GACCTGTTCC TCAGCCCATC GCAAATGCGC
CTGGTATTCG ACGGCGACCG TGCCCTGGCG CGTGTCTCGG GGCTCGACCG CCGTGGTCGC
CGTGAAGGTG TGCTGGTAGA GGTCATTTCC CGCGGCCACG AAAGCGTGGT CGGCCGCTAC
TTCGAAGAAG GCGGCATCGG TTACGTGACG CCGGACAACC CGAAGATCCA GCAGGAAGTG
CTGGTGACTG CGGGCCGTAA CGGTGGCGCC AAGATCGGCC AGTTCGTCGA GATCAAGATC
ACCCACTGGC CAACCCCGCG GTTCCAGCCA CAAGGCGATG TGGTCGAAGT GATCGGCAAC
TACATGGCGC CGGGCATGGA AATCGATGTT GCCCTGCGCA GCTATGACAT CCCGCACGTC
TGGCCCCAGG ACGTGATCAA GGAAGCGCGC AAGTTCCGCT CCGATGTCGA AGAGAAGGAC
AAGGAAAAGC GTATCGACCT GCGCCACTTG CCCTTCGTCA CCATCGACGG CGAAGATGCC
CGCGACTTTG ACGACGCTGT TTATTGTGAG CCGCTTGGCA AGCTGCGGCT GTTCTCCGGT
GGCTGGCGCC TCTATGTGGC CATCGCTGAC GTGTCCAGCT ACGTGCGTCT GGGCTCTGCC
CTGGATGTCG AGGCGCAGCA GCGCGGCAAC TCGGTGTACT TCCCCGAGCG TGTTGTCCCG
ATGCTACCCG AGGAACTGTC CAACGGCCTG TGCTCGCTGA ACCCGCACGT CGATCGCCTT
GCCATGGTCT GCGAAATGAC CATGAACAAG GCCGGCCAGA TGGTCGACTA CCAGTTCTAC
GAAGGGGTGA TCCACTCCCA TGCCCGCCTG ACCTACAACA AGGTCAGCAG CATGCTCGAA
CACGCCCGTA CCCGTGAGGG CAAGGCGCTG CGCGAGGAGT ACAAAGAGGT CCTGCCGGAC
CTGAAGAACC TGTACAACCT GTACAAGGTG CTGCTCGATG CCCGTCACGC CCGCGGCGCC
ATCGATTTCG AAACTCAGGA AACCCGCATC ATCTTCGGTG AAGAGCGCAA GATCGCGGAA
ATCCGCCCGA CCGTGCGCAA CGATGCCCAC AAGCTGATCG AGGAATGCAT GTTGGCGGCC
AACGTCGCCA CGGCCGAGTT CCTCAACAAG CATGGCGTGC CGGCGCTGTA CCGCGTTCAC
GATGGTCCGC CACCGGAGCG CCTGGAAAAG CTGCGTGCCT TCCTCGGCGA GCTGGGCCTT
AGCCTGCACA AAGGCAAGGA CCCGTCGCCC AAGGACTACC AGGCACTACT TGCAAGCATT
GCCGGGCGCC CGGACTTCCA CCTGATCCAG ACGGTGATGC TGCGGTCGCT GAGCCAGGCG
GTGTACAGCA CCGACAACAA CGGCCACTTC GGTTTGAACT ACGAGGCGTA CACGCACTTT
ACCTCGCCGA TCCGTCGTTA CCCGGACCTG CTGGTGCACC GCGCCATCCG CAGCATCATC
CGTTCCAAGG TCGATACTCC GCACGTCAAG CGTGCCGGCG CCATGAGCAT TCCCAAGGCG
CGTATCTATC CGTACGACGT GAATACCCTC GATCAGCTCG GCGAGCAGTG CTCCATGACC
GAGCGCCGTG CCGACGAAGC CACCCGTGAC GTCGTCAACT GGCTCAAGTG CGAGTTCATG
AAGGACCGCG TGGGCGAGAC CTTCCCGGGT GTGATCACCG CGGTCACCGG TTTCGGGCTG
TTTGTCGAGC TGACCGATAT CTACGTCGAA GGCCTGGTGC ACGTCAGCGC GCTGCCGGGT
GACTACTACC ACTTCGACCC CGTGCATCAC CGCTTGGCGG GTGAACGTAC CGGGCGCAGC
TTCCGTCTGG GCGACACCAT CGAGGTCAAG GTCATGCGCG TCGATCTCGA CGAGCGCAAG
ATCGACTTCG AAGTGTCCGA GCAGCAACTC GCTGCGCCGA TTGGCCGCAA GGGCCGTGGC
GCCGCACCGG CCGCCGAAAA AGCCGAGCAG CAGCCAGCGG TGGAGGCCAA GGCCACACCG
AAACCGCGCA GCCGCAAGAG CGAGACCGCC GAGGCATACT TCCCGAAAGA CGCTGTGCAG
CGTAATGCCG AAGTGCGCAA AAGCCGCGAA ATGAAGAAGG CGCTGATGAC CGACGCGCGC
ACTGGCGGCA ACGCCGGCAG CAAGTCGGAC AAAGGCGGCA AGCCCTCCGG CAAGCCCACC
AAGCACCGTA AAGGCCCGTC GAAATCCGGC GCGCCACGCA AGAGCAAGAA CAAGTCATGA
|
|---|
| Protein sequence | MADWQSLDPE AAREAEKYDN PIPSRELILQ RLADRGEPAA REELAAEFGL YEEDQIEALR
RRLRAMERDG QLIYTRRGTY APVDKLDLIC GRISGHRDGF GFLIPDDGSD DLFLSPSQMR
LVFDGDRALA RVSGLDRRGR REGVLVEVIS RGHESVVGRY FEEGGIGYVT PDNPKIQQEV
LVTAGRNGGA KIGQFVEIKI THWPTPRFQP QGDVVEVIGN YMAPGMEIDV ALRSYDIPHV
WPQDVIKEAR KFRSDVEEKD KEKRIDLRHL PFVTIDGEDA RDFDDAVYCE PLGKLRLFSG
GWRLYVAIAD VSSYVRLGSA LDVEAQQRGN SVYFPERVVP MLPEELSNGL CSLNPHVDRL
AMVCEMTMNK AGQMVDYQFY EGVIHSHARL TYNKVSSMLE HARTREGKAL REEYKEVLPD
LKNLYNLYKV LLDARHARGA IDFETQETRI IFGEERKIAE IRPTVRNDAH KLIEECMLAA
NVATAEFLNK HGVPALYRVH DGPPPERLEK LRAFLGELGL SLHKGKDPSP KDYQALLASI
AGRPDFHLIQ TVMLRSLSQA VYSTDNNGHF GLNYEAYTHF TSPIRRYPDL LVHRAIRSII
RSKVDTPHVK RAGAMSIPKA RIYPYDVNTL DQLGEQCSMT ERRADEATRD VVNWLKCEFM
KDRVGETFPG VITAVTGFGL FVELTDIYVE GLVHVSALPG DYYHFDPVHH RLAGERTGRS
FRLGDTIEVK VMRVDLDERK IDFEVSEQQL AAPIGRKGRG AAPAAEKAEQ QPAVEAKATP
KPRSRKSETA EAYFPKDAVQ RNAEVRKSRE MKKALMTDAR TGGNAGSKSD KGGKPSGKPT
KHRKGPSKSG APRKSKNKS
|
|---|
| |