| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4342 |
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| Symbol | secF |
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| ID | 6113311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4785119 |
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| End bp | 4786027 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641624136 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001751191 |
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| Protein GI | 170723503 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.557524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000000544827 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACCA TCAACTTCAT GGGCGTGCGC AATGTTGCGT TCGCCATAAC CGTGCTCCTT
ACCGTGCTGG CACTGTTCAG CTGGTGGCAG AAGGGCCTGA ACTTCGGCCT GGACTTCACC
GGCGGTACGC TGATCGAGCT GACCTACGAA CGCCCGGCCG ACCTCAAGGC GGTACGTGCC
GAGCTGGTCG AATCCGGCTT CCAAGATGCC GTGGTGCAGA GCTTCGGCGC TACCACCGAC
CTGCTGGTGC GCATGCCTGG CGATGACCCG ATGCTGGGTA ACAAGGTGGC CGAAGCCCTG
CAGAAGATTG GCGGTGACAA CCCGGCGACG GTCAAGCGCG TCGAGTTCGT CGGCCCGCAG
GTGGGTGAAG AACTGCGTGA CCAGGGGGGC CTCGGCATGC TCCTGGCGCT GGGCGGCATC
CTCATCTACC TGGCCTTCCG CTTCCAGTGG AAGTTCGCCG TGGGCGCGAT CATCTCGCTG
ATCCACGACG TGGTGGTGAC GCTGGGTATC CTGTCGTTCT TCCAGATCAC CTTCGACCTG
ACGGTGCTGG CGGCGGTGCT GGCGATCATC GGTTACTCGC TCAACGACAC CATCGTTGTG
TTCGACCGGG TACGTGAGAA CTTCCGCGTG ATGCGCAAGG CTTCGCTGAT CGAGAACATC
AATATCTCGA CCACACAGAC CTTGCTGCGC ACCGTAGCCA CTTCCGTTTC GACCCTGCTG
GCAATCGCTG CGCTGCTGTT CTTCGGCGGT GACAACCTGT TCGGCTTCTC CCTGGCCCTG
TTCATCGGTG TCATGGCGGG TACCTACTCC TCGATCTACA TCGCCAACGT GGTGCTGATC
TGGCTGAACC TGAACAGCGA AGACCTGATT CCGCCGGCCA AGACCGACGG TGTGGATGAT
CGTCCTTAA
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| Protein sequence | MKTINFMGVR NVAFAITVLL TVLALFSWWQ KGLNFGLDFT GGTLIELTYE RPADLKAVRA
ELVESGFQDA VVQSFGATTD LLVRMPGDDP MLGNKVAEAL QKIGGDNPAT VKRVEFVGPQ
VGEELRDQGG LGMLLALGGI LIYLAFRFQW KFAVGAIISL IHDVVVTLGI LSFFQITFDL
TVLAAVLAII GYSLNDTIVV FDRVRENFRV MRKASLIENI NISTTQTLLR TVATSVSTLL
AIAALLFFGG DNLFGFSLAL FIGVMAGTYS SIYIANVVLI WLNLNSEDLI PPAKTDGVDD
RP
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