| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4313 |
|---|
| Symbol | |
|---|
| ID | 6113282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4755712 |
|---|
| End bp | 4756200 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641624107 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001751162 |
|---|
| Protein GI | 170723474 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.737925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0110749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGGAC ACAAAGGCTT CCTCGACCAT TACCAAGAGC TGATCGGCAC CTGGACGCGC
AAGCTGCGCA GTCGTCAGCA GGCCGAGGAC CTCACCCATG ACGCCTTCAT ACGGGTTCTG
GAAAACCCGC GCGAGCAGGT CGAGCAGCCA CGTGCCTACC TTCACCAGAC CGCCCGCAAC
ATTGCGGTGG ACGGTTTTCG CCGCGAAGAC CGGCGCCAGG CGCTCGAGCT TGAAGCCTTT
GATGAAGGGG CCGGCGGCAC GGACGACCCC GAGGCGTATG TACATGCCCT GGAACTGGCC
GCCAGCGTCG AGCGGGCGCT GGCCGAGCTG CCGCTCAATT GCCGACGTGT GTTCATCTGG
CAGAAGCTCG AGGGGCTGAC CCAGGCCGAG ATCGCCGAGC GCATGGGTTT GACCAAGAAT
ATGGTCGAAA AGTATATGAT CCGCACGCTC CGGCATTTGC GTGAGCACCT GGATGTGTCG
GCAAGATGA
|
|---|
| Protein sequence | MSGHKGFLDH YQELIGTWTR KLRSRQQAED LTHDAFIRVL ENPREQVEQP RAYLHQTARN
IAVDGFRRED RRQALELEAF DEGAGGTDDP EAYVHALELA ASVERALAEL PLNCRRVFIW
QKLEGLTQAE IAERMGLTKN MVEKYMIRTL RHLREHLDVS AR
|
|---|
| |