| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3840 |
|---|
| Symbol | |
|---|
| ID | 6112804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4273443 |
|---|
| End bp | 4277348 |
|---|
| Gene Length | 3906 bp |
|---|
| Protein Length | 1301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641623630 |
|---|
| Product | ATP-dependent helicase HrpA |
|---|
| Protein accession | YP_001750690 |
|---|
| Protein GI | 170723002 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC ACGCCATCGA CAAACTGCTG CAAAACCTCG ACCACGCCAT GATCGCCGAC
CGCCATCGCC TGCGCCGGCA ACTGCATGAG CTGCGCAAGC GCCCCGACGA GGCCAAGCTC
GCGCAGTGGG TGGAAAAGGT CCAGGCGTCT TGCGCCCAGG TGACCGCGCG CCAGCACAGT
GTGCCGCGCA TCCGCTACGA CGACAGCTTG CCGATTGCCG CCAAGCGTGA CGAGATCAAA
AAGGCATTGG CCGAAAACCA GGTCCTGGTG ATTGCCGGTG AGACCGGTTC GGGCAAGACC
ACCCAGCTAC CCAAGATCTG CCTGGAGCTG GGCCGCGGCA GCCACGGCCT GATCGCCCAC
ACCCAGCCAC GGCGGATTGC GGCGCGCAGC GTTGCTGCCC GTGTGGCTGA AGAGCTTGGT
ACACCGCTGG GCGCCCTGGT CGGTTACCAG GTACGGTTCG AGGACCAGAG CGACGCCAAC
ACCTTGGTCA AGCTGATGAC CGACGGCATC TTGCTGGCCG AAACCCAACA TGACCGCTTC
CTCGAGCGCT ACGACACGAT CATCGTCGAC GAGGCGCACG AGCGCAGCCT GAACATCGAT
TTCCTGCTCG GCTACCTCAA GACCCTGCTG CATCGCCGCC CGGACCTGAA GCTGATCATC
ACTTCGGCAA CCATCGACCT GGAGCGCTTC TCCAAGCATT TCGATGGTGC GCCGATCATC
GAGGTGTCCG GCCGTACCTA TCCGGTGGAC ACTTGGTATC GCCCGCTGAC CAGTGAACAG
GACGAAGAAG GCAACCAGGT CGAGGACGAC CTCACCGTCG ACCAGGCGAT CCTCGCCACC
CTCGATGAGA TCGCCCACCA CGAGCGCAGC GAGGGCAAGG GCCCCGGCGA CGTGCTGGTG
TTCCTGCCGG GCGAGCGCGA GATTCGCGAT GCCGCCGAGA TCCTGCGTAA GGCCCAGTTG
CGTCATACCG AGATCCTGCC GCTGTATGCG CGCCTGTCTC CGGCCGAGCA GCAGCGTATC
TTCCAGTCGC ACACTGGCCG CCGTGTGGTG CTGGCCACCA ACGTGGCGGA AACCTCGCTG
ACCGTGCCAG GCATCCGCTA TGTAATCGAC ACCGGTACCG CCCGCATCAG CCGCTACAGC
TACCGGGCCA AGGTCCAGCG CTTGCCGATC GAAGCGGTAT CCCAGGCCAG CGCCAACCAG
CGTAAGGGCC GTTGCGGCCG TGTCGAGCCT GGCATTTGCA TACGCCTTTA CAGCGAAGAA
GACTTCAACG GCCGGCCAGC CTTCACCGAC CCCGAGATCC TGCGCACCAA CCTGGCGGCG
GTGATCCTGC AGATGCTGCA CCTGCGGCTG GGCGCCATTG ATGCCTTCCC GTTCATCGAG
CCGCCGGATG GCAAGGCCAT CAGCGACGGC TTCAACCTGC TGCAGGAGCT GTCGGCGGTC
AACCGCGAGA ACCAGCTGAC GCCCCTGGGC CGTCAGCTGG CGCGCTTGCC GATCGACCCC
CGGCTGGGCC GGATGCTGCT CGAAGGCGCC CGTCAGGGCA GCCTGCAGGA AGTGCTGATC
GTCACCAGTG CATTGTCGGT GCAGGACCCG CGCGAGCGCC CGCCGGAGCG TCAGCAGGCG
GCTGACCAGG CGCATGCGCA GTGGAAAGAT GTGGATTCCG ATTTTGCCGC ACTGGTCAAC
CTGTGGCGTG GCTTCGAGGA GCAGCGCCAG GCGCTGACGG CCAACCCGCT ACGCAACTGG
TGCCGCAAGA ATTTTCTCAA CTATTTGCGC CTTCGCGAAT GGCGCGACGC CCATCGTCAG
TTGGCGCTGA TCTGCCGTGA CCTGCAACTG ACGGTGAACA AAGATCCGTC CGACTACCAG
AAGATGCACA AAGCCATCCT CAGCGGGCTG CTCAGCCAGA TCGGCCACAA GACCGAAGAC
GGCGACTACC AGGGCGCGCG TCAGCGGCGT TTCTGGGTGC ATCCGTCTTC AGGCATTGGC
CGCAAGCGCC CGCAGTGGGT CATGGCCGCC GAGCTGGTGG AGACCACCAA GTTGTATGCG
CGCATGGTGG CCAAGATCGA GCCCGACTGG ATCGAGCCGC TGGCGACTCA CCTGGTCAAG
AAGAACCACT TCGAACCGCA CTGGGAGAAG AAGCGCGGGC AGGTGGTGGC CTACGAGCAA
ATCACCCTGT ACGGGCTGAT CCTGGTCGGC CGCCGCCCAG TGCATTACGG TCCGATCGAC
CCGGTTACCT CGCGTGAGCT GTTCATACGC GAAGGGCTGG TTGGGGGCGA AATCCAGTCG
CGAGCCAAGT GCCTGGCCGC CAACAAGCGC CTGCTTGAAG AGCTCGACGA GCTGGAAGCC
AAGGCGCGTC GGCGCGACAT TCTTGCCGAT GAAGAAACCC TTTACGCCTT CTACGAAGCG
CGCCTGCCAG CGGAGATCCA CCAGACCGCG ACCTTCGACA GCTGGTATCG CATGGGCAGC
CAGAAGGATG CGAGCCTGCT TATCATGCGT GAGGAAGACG TGTTGGCCCG TGAGGCCAGC
GAAGTCACTG CGGCGCAATA CCCGGACAGC CTGCAGGTCG GCGAGCTGCG CCTGCCGCTG
AGCTACCACT TCGAACCAGG CCACCCACGC GACGGCGTGA CTGTAAGGGT GCCCGCGCCG
CTGTTGCCAA GCCTGCCGGG CGAGCGCCTG GAGTGGCTGG TGCCGGGCTT GCTCGAAGCC
AAGTGCGTGG CGCTGGTGCG CAACCTGCCC AAGGCCCTGC GCAAGAACTT CGTGCCGGTA
CCGGATTTCG TCAAGGCATC GCTGGCACGC ATGACGTTCG GCCAGGGGGC CTTGCCTCAG
GCCTTGGGGC AGGAGCTGTT GCGCATGACC GGTGCCCGTG TGTCCGATGA GGCCTGGGCA
GAGTCGGTAG GCCTGGTCGA AGGGCATCTG CGCATGAATA TCGAGGTGGT CGATGGCCAG
GGCAAGTTCC TCGGCGAGGG CCGCGACCTG GCCGAGTTGA CCGCACGCTT TGCTGCCGCC
AGCCAGGCAG CGCTGGCGGT GCCGCGCGAC GACAAGGGCG CGCAGCCGGT GCAGGCCAAG
GCCTTCAGTG AAGTGAAGCA GACCGCCCAG CAGAAGATCG CCGGGCTGTC GATGACGGTG
TACCCGGCAT TGGTGGAAGA GAGCGGCAGC GTGCGCGAGG GGCGTTTCTC GACCCAGGCC
GAAGCCGAGT TTCAGCATCG CCGTGCCTTG CAGCGCCTGT TGCTGCAACA GTTGGCAGAG
CCTGCCAAGT TCCTGCGCGG CAAGCTCCCC GGGTTGACCG AACTGGGCTT GCTGTACCGC
GAACTGGGCC GCGTCGAGGC GCTGGTGGAG GATATCCTGC TGGCCAGCCT CGACAGTTGC
ATCCTCGAAG GGGAGGCCAC GCTACCGCGC GATGGCGCAG CATTGGCCGG GCTTGCCGAG
CGCAAGCGCG GCAGCTGGGC CGAGCATGCC GAGCGCCTGG CCCGCCAGAC GCTGGAAGTG
CTCAAGCTGT GGCACAGCCT GCAGAAGCGT TTCAAAGGCA AGATCGACCT GAGCCAGGCG
GTGGCGCTGA ACGACATCAA GCAGCAGTTG GCCAACCTGG TGTATCCGGG CTTCGTGCGC
GAGACGCCTT CGGCCTGGTT CAAGGAGCTG CCGCGCTACC TCAGGGCGGT GGAGTTGCGC
CTGGAGAAGC TTGGCACCCA GGTGCAGAGG GACCGGGTGT GGAGTGGCGA GCTGACCAAC
CTCTGGGCCC AGTACAAGGC CCGTGCCGAC AAGCACGCCC AAGAGGGCAA GCGCGACGAG
CAGCTGACCT TGTACCGCTG GTTGCTGGAA GAATATCGGG TGTCGCTGTT TGCCCAGCAA
TTGGGCACGA AAGTACCGAT TTCTGACAAG CGTCTGAGCA AACAGTGGTC TCAGGTGGAA
GCCTAA
|
|---|
| Protein sequence | MTDHAIDKLL QNLDHAMIAD RHRLRRQLHE LRKRPDEAKL AQWVEKVQAS CAQVTARQHS
VPRIRYDDSL PIAAKRDEIK KALAENQVLV IAGETGSGKT TQLPKICLEL GRGSHGLIAH
TQPRRIAARS VAARVAEELG TPLGALVGYQ VRFEDQSDAN TLVKLMTDGI LLAETQHDRF
LERYDTIIVD EAHERSLNID FLLGYLKTLL HRRPDLKLII TSATIDLERF SKHFDGAPII
EVSGRTYPVD TWYRPLTSEQ DEEGNQVEDD LTVDQAILAT LDEIAHHERS EGKGPGDVLV
FLPGEREIRD AAEILRKAQL RHTEILPLYA RLSPAEQQRI FQSHTGRRVV LATNVAETSL
TVPGIRYVID TGTARISRYS YRAKVQRLPI EAVSQASANQ RKGRCGRVEP GICIRLYSEE
DFNGRPAFTD PEILRTNLAA VILQMLHLRL GAIDAFPFIE PPDGKAISDG FNLLQELSAV
NRENQLTPLG RQLARLPIDP RLGRMLLEGA RQGSLQEVLI VTSALSVQDP RERPPERQQA
ADQAHAQWKD VDSDFAALVN LWRGFEEQRQ ALTANPLRNW CRKNFLNYLR LREWRDAHRQ
LALICRDLQL TVNKDPSDYQ KMHKAILSGL LSQIGHKTED GDYQGARQRR FWVHPSSGIG
RKRPQWVMAA ELVETTKLYA RMVAKIEPDW IEPLATHLVK KNHFEPHWEK KRGQVVAYEQ
ITLYGLILVG RRPVHYGPID PVTSRELFIR EGLVGGEIQS RAKCLAANKR LLEELDELEA
KARRRDILAD EETLYAFYEA RLPAEIHQTA TFDSWYRMGS QKDASLLIMR EEDVLAREAS
EVTAAQYPDS LQVGELRLPL SYHFEPGHPR DGVTVRVPAP LLPSLPGERL EWLVPGLLEA
KCVALVRNLP KALRKNFVPV PDFVKASLAR MTFGQGALPQ ALGQELLRMT GARVSDEAWA
ESVGLVEGHL RMNIEVVDGQ GKFLGEGRDL AELTARFAAA SQAALAVPRD DKGAQPVQAK
AFSEVKQTAQ QKIAGLSMTV YPALVEESGS VREGRFSTQA EAEFQHRRAL QRLLLQQLAE
PAKFLRGKLP GLTELGLLYR ELGRVEALVE DILLASLDSC ILEGEATLPR DGAALAGLAE
RKRGSWAEHA ERLARQTLEV LKLWHSLQKR FKGKIDLSQA VALNDIKQQL ANLVYPGFVR
ETPSAWFKEL PRYLRAVELR LEKLGTQVQR DRVWSGELTN LWAQYKARAD KHAQEGKRDE
QLTLYRWLLE EYRVSLFAQQ LGTKVPISDK RLSKQWSQVE A
|
|---|
| |