Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3648 |
Symbol | |
ID | 6112607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 4062463 |
End bp | 4064451 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641623434 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001750499 |
Protein GI | 170722811 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCGG CGTTGGTGAT CCCTGAACTT GGCCAATTGG CTATGATCCT GGCGATCTGT TTCGCCGTTG TGCAGGCGAC CCTGCCGTTG CTCGGCGCCT GGCGCGGCGA CAGTCTGTGG ATGAGCCTGG CACGCCCGGC GGCCTGGGGC CAATTTGCCT TCCTGGCCTT TGCCTTCGCT TGCCTGACCC ACGCCTTCAT GACCGACAAC TTCTCGGTTG CGTACGTGGC CAGCAACTCC AACAGCGCCT TGCCCTGGTA CTACAAGTTC AGTGCCGTGT GGGGCGCGCA TGAAGGCTCG TTGCTGCTGT GGGCGCTGAT TCTCGGTGGC TGGACCTTCG CCGTGTCGGT CTTCTCGCGC CAGTTGCCGC AAGTGATGCT GGCGCGGGTG CTGGCGGTGA TGGGCATGAT CAGTGTGGGC TTCCTGAGCT TTTTGATCAT CACCTCCAAC CCGTTCCAAC GTTTGCTGCC GCAAGTGCCG ACCGATGGCC GTGACCTCAA CCCGCTGCTG CAGGACTTTG GCCTGATCGT TCACCCGCCG ATGCTATACA TGGGCTATGT GGGCTTTTCG GTGGCCTTCG CCTTCGCCAT CGCTGCGCTG CTGGGCGGGC GCCTGGATGC AGCGTGGGCG CGCTGGTCGC GGCCCTGGAC CATCATTGCC TGGGCGTTCC TCGGCGTGGG CATCACCTTG GGCTCCTGGT GGGCCTATTA CGAACTGGGC TGGGGCGGCT GGTGGTTCTG GGACCCGGTG GAAAACGCCT CTTTCATGCC CTGGCTGGTA GGCACGGCAC TGATCCACTC GCTGGCGGTG ACGGAAAAAC GTGGCGTGTT CAAGAGCTGG ACTGTGCTGC TGGCGATTGC CGCGTTCTCG CTTAGCCTGC TGGGGACGTT CCTTGTGCGC TCCGGCGTGC TGACCTCGGT GCATGCGTTC GCCTCCGACC CGTCACGTGG CGTGTTCATC CTGATCTTCC TGCTGTTCGT GGTCGGTGGT TCGCTGACCC TGTTCGCCCT GCGTGCCCCG GTGGTCAAAA GCCAGGTGGG CTTTTCCCTG TGGTCGCGCG AAACGCTGCT GCTGGCCAAC AACCTGGTGC TGGTGGTGGC GGCTTCGATG ATCCTGCTCG GCACCCTCTA CCCGTTGGTA CTCGATGCCC TGACCGGGGC CAAGCTGTCG GTAGGCCCGC CATATTTCGA TGCCTTGTTC CTGCCGCTGA TGGCACTGCT GATGGTGGTG CTCGGCATCG GTGTGGTGGT GCGCTGGAAG GACACTCCTG GCAAGTGGCT GGCGAGCATG ATGACGCCGG TACTGATCGC GAGCGCAGTG CTGGCGCCAG TGGCCGGTTT CATCGTCGAC GACTTCGACT GGCCGACCCT GACCGCCTTT GCACTGGCTG CCTGGGTGGT GCTCAGCGGG TTGCGCGACA TTTTTGACAA AACCCGCCAC AAGGGCTTGG CCAAAGGCGT GCGTGGCCTG ACGCGCAGCT ACTGGGGCAT GCAGCTGGCG CACTTGGGGC TTGCGGTGTG CGCCCTTGGC GTGGTGCTGT CGAGCAACAA CAGTGCCGAG CGTGACCTGC GCCTGGCCCC GGGTGAAAGC GTGGAGCTGG GTGGTTATCA GTTCCTGTTC CAAGGCGCCA AGCACTTCGA AGGGCCGAAC TTCATTTCCG ACAAGGGCAC CGTCGTCGTC AGCCGCGATG GCCGTGAAGT GACCACGTTG CACCCCGAGA AGCGGCTCTA TACGGTGCAG CAGTCGATGA TGACCGAGGC CGGCATCGAT GCCGGTTTCA CCCGCGACCT GTACGTTGCC TTGGGCGAGC CGCTGGACAA CGGCGCCTGG GCCGTGCGCG TGCACATCAA GCCTTACGTC CGCTGGATCT GGCTGGGCGG TCTTTTGACC GGCCTGGGCG GTTTGCTGGC GGCCCTCGAC CGACGCTACC GCGTCAAGGT CAAGACCCGG GTGCGTGATG TCCTGGGCGT GTCTGGAGCA GCTGCATGA
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Protein sequence | MNAALVIPEL GQLAMILAIC FAVVQATLPL LGAWRGDSLW MSLARPAAWG QFAFLAFAFA CLTHAFMTDN FSVAYVASNS NSALPWYYKF SAVWGAHEGS LLLWALILGG WTFAVSVFSR QLPQVMLARV LAVMGMISVG FLSFLIITSN PFQRLLPQVP TDGRDLNPLL QDFGLIVHPP MLYMGYVGFS VAFAFAIAAL LGGRLDAAWA RWSRPWTIIA WAFLGVGITL GSWWAYYELG WGGWWFWDPV ENASFMPWLV GTALIHSLAV TEKRGVFKSW TVLLAIAAFS LSLLGTFLVR SGVLTSVHAF ASDPSRGVFI LIFLLFVVGG SLTLFALRAP VVKSQVGFSL WSRETLLLAN NLVLVVAASM ILLGTLYPLV LDALTGAKLS VGPPYFDALF LPLMALLMVV LGIGVVVRWK DTPGKWLASM MTPVLIASAV LAPVAGFIVD DFDWPTLTAF ALAAWVVLSG LRDIFDKTRH KGLAKGVRGL TRSYWGMQLA HLGLAVCALG VVLSSNNSAE RDLRLAPGES VELGGYQFLF QGAKHFEGPN FISDKGTVVV SRDGREVTTL HPEKRLYTVQ QSMMTEAGID AGFTRDLYVA LGEPLDNGAW AVRVHIKPYV RWIWLGGLLT GLGGLLAALD RRYRVKVKTR VRDVLGVSGA AA
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