| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3281 |
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| Symbol | |
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| ID | 6112232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 3622715 |
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| End bp | 3624970 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641623063 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001750135 |
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| Protein GI | 170722447 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0983086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTCG AACCACCTTC AGATCAGCAC CGCGACGGTG TCGATCCGAT CACGTCAGGA
GGCGTAAAGT CGATTCCTGC GCCTGAGCGT AGTAAATTTG GCGGTACCGA TCGCCTGTCC
AGGCGTCCAA GCTACGATGA CGATACACCC GTATCGCGCA GCGACCTGAG CAAAGGCCAT
GACGAACTCG TCGAGCATCG TGAGGTTCAT ATCAACTGGA GCGTCTTGTT GATTTCGTCA
GTGGTGATAC TGTCGTTTTC CATCACCACG ATCCTCATGC CCGATGCTGC ACGTGTGGCA
ATGAAGCAGA TCACAGACTG GATCGCGACG AACCTGGGCT GGTACTACGT ACTGACGATG
ACCCTGGTGA TCGGGTTCGT GCTATGGGTG GCGTTTTCCA AAGAGGGGGA CGTGCGTATT
GGCCCCGACC ACTCGCGGCC GCAGTACAAG CTGGTGACGT GGGTCGCCAT GCTGTTTGCC
GCAGGGGTCG GGATAGACAT GCTCTTCTAT TCGGTCACCG GCCCGGTCGT GCAGTATTTG
CACCCGCCCA GCGGCACCGG CGGGACTGCC GAGGCTATAC AGGACGCAGT GATCTGGACC
ATGTTTCACT ATGGCATCGC AGGTTGGGCG ATGTATGCCT TGCTGGGCAT GGCCATGGGT
TACTTTGCCT ATCGATGGGA CATGCCGCTG TCGATTCGCG CTGCGCTCTA TCCGCTGTTT
GGCAAACGCG TGCGCGGCCC GTTGGGCGAT GGCATCAGCA TCATTGCTTT GGTCGGTACC
GTGTTTGGCG TCGCCACATC GATGGGCATC GGCGTGGTAC TGTTGAGCGT GGGTTTCTCG
CTGATTTTTG GTCTGGATCA GGGCCTTACC TTGCAGACCG TACTGGTAGT GGGGGCTGTG
GCACTGACCA TTGCGGCTAC CACGTCCGGC GTCGACCGTG GTATCCGCTG GATCGCCGAG
CTGAACCTAT GGAGCGCCGT GGCCATGATG CTCTACATTC TACTGACCGG GGAGACGGCA
TTCCTGCTAA ACGCACTAGT GTCGAACATT GGGCAATTTC TTGTCACGTT CCCCGCGCGT
ACCTTTCAAA CCTTCGCCTA CTCGCCCGAT GGTGCCGGAT GGATGGCGGG CTGGACGTTG
TTCTTCTGGG CCTTCTGGCT GGCATGGGGG CCATTCGTTG GCGTGTTCCT GGCGCGGATT
TCGCGGGGGC GCACGCTGCG CGAATTCGTC CTGGCGGCAG TGACCGCGCC GGTGCTGTGC
GATTTCATCA TTGTTTCACT GTTTGGCAAT TCCGCACTGT TTGAGGTGCT GCAGGGCAAT
ACCGCTTTTG CCCAACTTGC GATGGACAGC CCCGAGCGGG GTTGGTACGC ACTGCTGGAG
ATGTTCCCGG CCCCAATGTT CTTGATTGGC CTGGCGACGC TGTCAGGTCT TTTGTTCTAC
CTCACCAGCG CCAATTCCGG GGCAATGGTG ATGTCGAATT TTTCGGCCTC GATTCCCGAC
CCTTCCCATG ACGGGCCAAG CTGGCTGCGT ATCTTCTGGG CCTTGCTCAC GGCCATGCTC
ACCGTGGCGA TGCTAGTTGC GGGAGGGGTC AAGACAATGG AGTACGCCAC GCTGATCTTC
GCGCTACCGG TGACGATCAT TGCTTATCTG GTGATGGCAT CGTTCTACAA AGTATTGCGC
ATGGAGCGCG CTGAACGCGA GGGAAGGGTA ATACGTCGTC CTTCCACGAC AGCTATCGGG
GGGCATGTCC CGGAGCGCTC CTGGAAGCAG CGGCTCGAGC ACTTGCGGGC ATTCCCATCG
CTGCGCCAAG TCACCCAGTT CCTCAACCGT ATTGTCGGGC CAGCACTGGA CGAAGTCGCG
GCCGAGTTTC GCAATCAGGG GTATGACGTC ACACGGGAAA GTGTGGTCAA CAGCGATGGT
TTCGAGGAGC CGTTGCTGCT GGTCTCGATG GATACGTTCC GCGATTTCCA TTACCACGTG
GCCATCGTAG AGGCGCCAGT GCCCATGTTC AGCGGCCGTA TGACGCGAGA GATCGATGTC
TATTATCGGT TGGAGGTGTA TACCCAGACC GGGTCTGGTG GATATGACCT GATGGGGCTG
ACCAAACGGC AGGTCATCGA CGATGTACTC GATCGATATG AGACCCACCT GGCGTTCCTT
GTCTTTTCGA GCGAAAATGC TACTGCCTCT GTTCTGACAC CCAGGCAGTA CCAGCCCCCT
GAGGCGCCCG ATGAATCCGG GCAGGGCCCG CGCTGA
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| Protein sequence | MPFEPPSDQH RDGVDPITSG GVKSIPAPER SKFGGTDRLS RRPSYDDDTP VSRSDLSKGH
DELVEHREVH INWSVLLISS VVILSFSITT ILMPDAARVA MKQITDWIAT NLGWYYVLTM
TLVIGFVLWV AFSKEGDVRI GPDHSRPQYK LVTWVAMLFA AGVGIDMLFY SVTGPVVQYL
HPPSGTGGTA EAIQDAVIWT MFHYGIAGWA MYALLGMAMG YFAYRWDMPL SIRAALYPLF
GKRVRGPLGD GISIIALVGT VFGVATSMGI GVVLLSVGFS LIFGLDQGLT LQTVLVVGAV
ALTIAATTSG VDRGIRWIAE LNLWSAVAMM LYILLTGETA FLLNALVSNI GQFLVTFPAR
TFQTFAYSPD GAGWMAGWTL FFWAFWLAWG PFVGVFLARI SRGRTLREFV LAAVTAPVLC
DFIIVSLFGN SALFEVLQGN TAFAQLAMDS PERGWYALLE MFPAPMFLIG LATLSGLLFY
LTSANSGAMV MSNFSASIPD PSHDGPSWLR IFWALLTAML TVAMLVAGGV KTMEYATLIF
ALPVTIIAYL VMASFYKVLR MERAEREGRV IRRPSTTAIG GHVPERSWKQ RLEHLRAFPS
LRQVTQFLNR IVGPALDEVA AEFRNQGYDV TRESVVNSDG FEEPLLLVSM DTFRDFHYHV
AIVEAPVPMF SGRMTREIDV YYRLEVYTQT GSGGYDLMGL TKRQVIDDVL DRYETHLAFL
VFSSENATAS VLTPRQYQPP EAPDESGQGP R
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