| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3276 |
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| Symbol | |
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| ID | 6112227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 3616299 |
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| End bp | 3617684 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641623058 |
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| Product | GABA permease |
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| Protein accession | YP_001750130 |
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| Protein GI | 170722442 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.737428 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGCA ACTCAACTCT GGCCCCCGGC CTCAAGCAGC GTCACGTCAC CATGCTGTCA
ATCGCTGGCG CTATCGGCGC CGGCCTGTTC ATCGGATCGG GGCATGCCAT TGCTGCGGCC
GGTCCTGCGG CAATTCTCGC GTACATCATG TCTGGCACGC TGGTCGTTCT GGTCATGCGC
ATGCTCGGAG AAATGGCGGT GGCCTCGCCC GATACCGGGT CATTCTCGAC CTACGCCGAA
CGGGCAATGG GACGTACGGC AGGCTTTACC ATCGGTTGGC TGTACTGGTG GTTCTGGGTG
CTGGTCATTC CAATCGAAGC CATTGCGGCA GCGGCCATTC TGCATGCCTG GTTCCCCGCG
ATAGAAACCT GGGAATTCGC CCTGGCGGTC ACCGGTTTGC TGACCTTGAC CAACCTGTTC
AGTGTGGCGC GCTACGGTGA ATTCGAGTTC TGGTTTGCGA TGCTCAAGGT TATCGCGGTG
CTGGGGTTCA TTGCTCTAGG TGCATTGGCA CTGACCGGCG CGTTGCCCGA TGTTTCGGTC
AGCGGCGTGG TCAACCTGAG CCATGAGTTT GGGGGTTTCA TGCCCAACGG CATGACCGCG
GTCATCGGTG CTATGCTCAC CACCGTGTTC AGCTTCATGG GTACTGAAAT TGTCACCATT
GCCGCCGCCG AGTCGAAAAA TCCCTCCAAG CAAATCACCC GTGCCACCAA TTCAGTGGTG
TGGCGAATGG GGATCTTCTA CATCGTCTCG GTGTTCCTAA TCATCTCCAT CGTCCCCTGG
AACGACCCCA TGCTGGTGCA GGTCGGTTCC TATCAACGGG CCCTTGAATT GATGAACATC
CCGCACGCCA AAATGATCGT CGATATCGTG GTGCTGATTG CCGTCGCCAG TTGCCTCAAC
TCAGCCATCT ACACCGCATC GCGCATGGTC TATTCGCTGA GTAAGCGCGG CGACGGCCCA
CGCGTTCTGC AGCGCACCTC AGCGGCGGGC GTGCCAGTGA TTGCAGTGCT GGCCAGTACC
GCAGTGGGCT TCTTGACCAC TGCACTCAAT TACTTTGCTC CCGACGAGGT GTTTTCCTTC
CTGCTGGCAA GTTCGGGGGC GGTAGCGCTT CTGGTCTATC TGGCAATCGC TGTTTCGCAA
TTGGTTCTGC GTAAGCGGAT GGACAGCCAA GGCACTGCGC TGGACTTCAA GATGTGGATG
TTCCCCTGGC TCAGCTACCT GGTCATCTGC TCCATAATCA GCATTCTGAC GATGATGCTG
GTGATGCCAG GGCATCGCAT GGAAGTGGTG GCAACCGGCG CGCTGGCGCT GTCCATCGTC
TGTATCAGCG CTATTTTCTC GTCTAAAAAA AGCACTTCGG CCACTGTGGC GAGCAAGCCT
GCCTGA
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| Protein sequence | MSSNSTLAPG LKQRHVTMLS IAGAIGAGLF IGSGHAIAAA GPAAILAYIM SGTLVVLVMR
MLGEMAVASP DTGSFSTYAE RAMGRTAGFT IGWLYWWFWV LVIPIEAIAA AAILHAWFPA
IETWEFALAV TGLLTLTNLF SVARYGEFEF WFAMLKVIAV LGFIALGALA LTGALPDVSV
SGVVNLSHEF GGFMPNGMTA VIGAMLTTVF SFMGTEIVTI AAAESKNPSK QITRATNSVV
WRMGIFYIVS VFLIISIVPW NDPMLVQVGS YQRALELMNI PHAKMIVDIV VLIAVASCLN
SAIYTASRMV YSLSKRGDGP RVLQRTSAAG VPVIAVLAST AVGFLTTALN YFAPDEVFSF
LLASSGAVAL LVYLAIAVSQ LVLRKRMDSQ GTALDFKMWM FPWLSYLVIC SIISILTMML
VMPGHRMEVV ATGALALSIV CISAIFSSKK STSATVASKP A
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