Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3007 |
Symbol | nikC |
ID | 6111958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 3349111 |
End bp | 3349956 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641622794 |
Product | nickel transporter permease NikC |
Protein accession | YP_001749868 |
Protein GI | 170722180 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0763396 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.524853 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGTGC AGTCTGCCCT GCGTCAACCA TTGCTGCTGC GCCGCCCCAG CCTGATGATC GGCCTGGCCC TGGTCGGGCT GCTCGCATTG CTGGCGCTGT TCGGCCACTG GATCGCCCCG CATGACCCCG ACCTGGTCGA CCTCGGCCAG CGCCTGCAGG CGCCCGACGC CAGCCACTGG CTGGGCACCG ACCACCTCGG GCGCGACCTG CTTTCGCGGC TGATCGTCGG CACGCGCCTG TCCTTGGGCA GCGTGATGCT GACCCTGGCG CTGGTGCTGG CGCTAGGGCT CGCGGTAGGC GGCGTGGCCG GGTTCGTCGG CGGGCGCACC GACCTGCTGC TGATGCGCCT GTGCGACATG TTCATGACCT TCCCCACGCT GGTCCTGGCA TTCTTCTTCG TCACCTTGCT GGGCACCGGC CTTAGCAACG TGATCATCGC CATCGCCCTG TCCCACTGGG CCTGGTATGC GCGCATGGTG CGCGGCCTGG TGATTGCCCA GCGCGGCCGC GAATACGTGT TGGCTTCACG CCTGGCCGGT GCTTCACGCT GGGCGCGGCT GCGCCAGCAT GTGCTGCCCA ATATCGCCGG CCCATTGCTG GTGCTGGCGA CCATGGATAT CGGCCACATG ATGCTGCACG TCTCCGGCCT GTCGTTCCTT GGCCTTGGGG TGGCGCCGCC CACCGCCGAA TGGGGCGTGA TGATCAACGA CGCCAAGGAA TTCATCTGGA CGCACCCGCA ACTGCTGCTG TTGCCAGGGC TGATGATCTT CTTCTCGGTG ATGGCCTTCA ACCTGCTGGG CGATGCGCTG CGCGACCGCC TCGACCCCAC ACAGGAGCGC CATTGA
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Protein sequence | MSVQSALRQP LLLRRPSLMI GLALVGLLAL LALFGHWIAP HDPDLVDLGQ RLQAPDASHW LGTDHLGRDL LSRLIVGTRL SLGSVMLTLA LVLALGLAVG GVAGFVGGRT DLLLMRLCDM FMTFPTLVLA FFFVTLLGTG LSNVIIAIAL SHWAWYARMV RGLVIAQRGR EYVLASRLAG ASRWARLRQH VLPNIAGPLL VLATMDIGHM MLHVSGLSFL GLGVAPPTAE WGVMINDAKE FIWTHPQLLL LPGLMIFFSV MAFNLLGDAL RDRLDPTQER H
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