| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2938 |
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| Symbol | |
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| ID | 6111889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 3256290 |
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| End bp | 3259415 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641622725 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001749799 |
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| Protein GI | 170722111 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.585633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0317577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAT TCTTCATCGA CCGCCCGGTA TTTGCCTGGG TGGTCGCGCT GTTCATCCTG
CTGGCCGGGG CCCTGGCCAT CCCGCAACTG CCGGTGGCCC AATACCCCAA CGTGGCCCCG
CCGCAGGTGG AAATCTATGC CGTGTACCCG GGGGCGTCCG CAGCCACCAT GGACGAGAGC
GTGGTCAGCC TGATCGAGCA GGAGCTCAAC GGTGCCGACA ACCTGTTGTA CTTCGAATCG
CAGAGCAGCC TGGGCAGCGC CACCATTACC GCCACCTTCG AGCCGGGGAC CCACCCGGAT
CTGGCCCAGG TCGACGTGCA AAACCGCCTC AAGGTGGTCG AGTCGCGCTT GCCGCGCCCG
GTGACCCAGC AGGGCCTGCA GGTGGAAAAA GTGTCCACCG GTTTTCTGCT GCTCGGCACC
CTGACCTCTG AAGACGGCAG CCTTGATGAA ACCGCCCTGT CGGATATCCT TGCCCGCAAC
GTGATGAACG AAATCCGCCG TCTCAAGGGC GTAGGCAAAG CCCAGCTTTA CGGTTCCGAG
CGTGCCATGC GGATCTGGAT CGACCCTGGC AAGCTGATCG GTTTCAGCCT CACTCCCAAC
GATGTGGCCA ATGCCATCGC CGCACAAAAC GCCCAGGTGG CTCCCGGCAG CATCGGCGAC
CTGCCTGCCC GCAGCACCCA GGAGATCACC GCCAATGTGG TGGTCAAGGG CCAGCTGAGC
ACGCCGGAAG AATTTTCCGC CATTGTGCTG CGGGCCAACC CGGACGGCTC AACGGTGACC
ATCGGCGATG TGGCGCGGGT CGAGATCGGC GCCCAGGAAT ACCAGTACGG CACACGCCTG
AACGGCAAGC CGGCCAGCGC CTTCAGCGTG CAGTTGGCAC CGGGGGCCAA CGCCATGGAA
ACGGCCACGC TGGTACGGGC GAAGATGCAG GAGCTGTCGG TTTATTTCCC GGAGGGAGTC
AAGTACGACA TCCCCTATGA CACCTCGCCG TTCGTCAAGG TCTCCATCCA GCAGGTCATC
AGCACCCTGT TCGAGGCCAT GCTGCTGGTT TTCGCCGTGA TGTTCCTGTT CCTGCAGAAC
CTGCGCTACA CGTTGATCCC GACCCTGGTG GTGCCGGTGG CGCTGATGGG TACCTTCGCC
GTGATGCTGG CGCTGGGCTT TTCGGTCAAT GTGCTGACAC TGTTCGGCAT GGTCCTGGCC
ATCGGCATTC TGGTCGACGA TGCCATCGTG GTGGTGGAGA ACGTCGAGCG GATCATGGCC
GAGGAAGGCT TGCCGCCGAA GGAGGCAACG CGCAAGGCGA TGGGCCAGAT CAGCGGCGCC
ATCATCGGCA TCACCCTGGT GCTGGTGGCG GTGTTCCTGC CCATGGCCTT CATGAAAGGC
TCTGTCGGGG TGATCTACCA GCAGTTCTCG CTGTCGATGG CCGTGTCGAT CCTGTTCTCG
GCGTTTCTGG CCCTGAGCCT GACCCCTGCC CTGTGCGCCA CCCTGCTCAC GCCGCTGCCC
AAGGGCGAAC ACCACGAAAG CAAGGGCTTC TTCGGCTGGT TCAACCGCAA TTTCGAACGC
ATGAGCAGCG GCTATGAGCG CTGGGTGGTG CAGGCCCTCA AGCGCAGCGG CCGCTACCTG
CTGGTGTATG GCGTGCTGCT GGCAGTGCTC GGCTACGGCT TCAGCCAGTT GCCCACGGCA
TTCCTGCCCA CTGAAGACCA GGGCTACACC ATCACCGACA TCCAGCTGCC ACCAGGTGCC
AGCCGCATGC GTACCGAGCA GGTAGCCGCA CAGATCGAGG CGCACAATGC CCAGGAGCCC
GGGGTGGGCA ACACCACGGT GATTCTCGGT TTCAGCTTCT CCGGTAGCGG GCAGAATGCG
GCGCTGACCT TCACCACCCT GAAGGACTGG TCCGAACGCG GCGCTGACGA CAGCGCCCAG
TCGATTGCCG ACCGCGCCAA CGCTGCATTC TCCCGGATCC GCGATGCGGT AGCGTTCTCT
GTGCTGCCGC CGCCCATCGA CGGCCTGGGA GAGTCCACCG GTTTCGAGTT GCGCCTGCAG
GACCGTGGTG GCATGGGCCA TGCCGCGCTG ATGGCGGCGC GTGACGAACT GCTGGCTGGC
GCCGGGAAAA GCAAGGTCTT GGTAAACGTG CGCGAAGCTT CGCTGGCCGA AAGCCCGCAG
GTACAGCTGG AAATCGACCG CCGCCAGGCC AATGCATTGG GCATATCGTT CGCCGACATT
GGCGCGGTGC TGGACACCGC CGTAGGCTCC AACTACGTCA ACGACTTCCC CAACCAGGGC
CGCATGCAGC GGGTGGTGGT GCAGGCCGAA GGCGACCAGC GCAGCCAGGT CGAGGACCTG
CTGAAGATCC ACGTGCGCAA CAGCAGCGGC AAGATGGTGC CATTAGGCGC GTTCGTACAG
GCCAAATGGG TCAGTGGCCC TGTGCAATTG ACCCGCTACA ACGGCTACCC GGCCGTGTCG
ATTTCCGGTG AGCCGGCGGC CGGTTATAGC TCGGGCGAGG CCATGGCTGA AGTCGAGCGT
CTGGTCGCGC AATTACCGGC CGGGGCCGGC CTGGAATGGA CCGGCTTGTC ATTGCAGGAG
CGCCTGTCCG GCAGCCAGGC ACCGCTGTTG ATGGCGCTGT CACTGCTGGT GGTGTTCCTG
TGCCTGGCGG CGCTGTACGA AAGCTGGTCG ATCCCCACCG CAGTGCTCCT GGTGGTACCG
CTCGGCGTGC TCGGCGCAGT GCTGGCGGTG ACCCTGCGCG GCATGCCCAA CGATGTGTTT
TTCAAGGTCG GCCTGATCAC CTTGATCGGC TTGTCGGCGA AGAACGCCAT CCTCATCATC
GAATTCGCCA AAAGCCTGGT GGACCAGGGT GTGGATGCCG TCGACGCCGC CGTGCAGGCC
GCCCGCCTGC GCCTGCGGCC GATCGTGATG ACCTCGCTGG CGTTCATACT CGGCGTGGTG
CCACTGGCCA TCGCCACCGG CGCCAGCTCG GCGAGCCAGC AGGCGATTGG CACCGGGGTG
ATCGGCGGGA TGCTCAGCGC CACACTGGCG GTGGTGTTCG TGCCGGTGTT CTTTGTGGTG
GTGATGCGTT TGGCGCAGCG CCGTCACAAG CAAAACGCGG TCGACGCTAA ACATGTAGTC
GTGTGA
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| Protein sequence | MPQFFIDRPV FAWVVALFIL LAGALAIPQL PVAQYPNVAP PQVEIYAVYP GASAATMDES
VVSLIEQELN GADNLLYFES QSSLGSATIT ATFEPGTHPD LAQVDVQNRL KVVESRLPRP
VTQQGLQVEK VSTGFLLLGT LTSEDGSLDE TALSDILARN VMNEIRRLKG VGKAQLYGSE
RAMRIWIDPG KLIGFSLTPN DVANAIAAQN AQVAPGSIGD LPARSTQEIT ANVVVKGQLS
TPEEFSAIVL RANPDGSTVT IGDVARVEIG AQEYQYGTRL NGKPASAFSV QLAPGANAME
TATLVRAKMQ ELSVYFPEGV KYDIPYDTSP FVKVSIQQVI STLFEAMLLV FAVMFLFLQN
LRYTLIPTLV VPVALMGTFA VMLALGFSVN VLTLFGMVLA IGILVDDAIV VVENVERIMA
EEGLPPKEAT RKAMGQISGA IIGITLVLVA VFLPMAFMKG SVGVIYQQFS LSMAVSILFS
AFLALSLTPA LCATLLTPLP KGEHHESKGF FGWFNRNFER MSSGYERWVV QALKRSGRYL
LVYGVLLAVL GYGFSQLPTA FLPTEDQGYT ITDIQLPPGA SRMRTEQVAA QIEAHNAQEP
GVGNTTVILG FSFSGSGQNA ALTFTTLKDW SERGADDSAQ SIADRANAAF SRIRDAVAFS
VLPPPIDGLG ESTGFELRLQ DRGGMGHAAL MAARDELLAG AGKSKVLVNV REASLAESPQ
VQLEIDRRQA NALGISFADI GAVLDTAVGS NYVNDFPNQG RMQRVVVQAE GDQRSQVEDL
LKIHVRNSSG KMVPLGAFVQ AKWVSGPVQL TRYNGYPAVS ISGEPAAGYS SGEAMAEVER
LVAQLPAGAG LEWTGLSLQE RLSGSQAPLL MALSLLVVFL CLAALYESWS IPTAVLLVVP
LGVLGAVLAV TLRGMPNDVF FKVGLITLIG LSAKNAILII EFAKSLVDQG VDAVDAAVQA
ARLRLRPIVM TSLAFILGVV PLAIATGASS ASQQAIGTGV IGGMLSATLA VVFVPVFFVV
VMRLAQRRHK QNAVDAKHVV V
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