| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2616 |
|---|
| Symbol | |
|---|
| ID | 6111567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 2900008 |
|---|
| End bp | 2901402 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641622405 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001749479 |
|---|
| Protein GI | 170721791 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0923502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.46243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATTC AGTCAGAGCA TGATCCGCGC CTAAAACGAT CACTGAAAAC ACGCCATATC
AGCATGCTTG CCCTTGGCGG CGTCATTGGT GCAGGTCTGT TCGTCGGTTC CAGCGCCGTC
ATCACCTCAA CCGGCCCGGG TGCGTTCCTC ACCTATGCCA TCACCGGCAT CATCGTCGCT
CTAGTGATGC GAATGCTCGG TGAGATGGCA GCGGCACATC CCACCAAAGG TTCTTTTGTT
GACTACGCCC GAATGGCGTT TGGCCGACCG GCTGGGTACA TGACCGGTTG GCTGTACTGG
TATTTCTGGG TCATTGTCGT CGGCTTTGAA GCCGTGGTTG GCGGCCAGAT CATCAATGGC
TGGTTCCCGG ATATTCCGGT CTGGGTCATT GCCCTGGGGC TCATGATCAG CATGACCTTG
CTGAACATGA TGTCGGTGCA CTCCTTCGGT GAGGCCGAAT ACTGGTTCGC CGGGGTTAAA
GTGGCCGCCA TCGTCGTATT CCTGCTCGTG GCGGGCGCCT ACGTGTTCCA TCTGTGGCCG
AACTCGACTG CCTCTTTTGA CAACTTGACC CAGCATGGTG GCTTCCTGCC CCACGGCGTA
GGTGCACTGT TCACGGGTGT CGTCGTGGTC ATTTTCTCCA TGACAGGTGT CGAGGTCGCG
ACACTCGCCG CGGCAGAATC GGAAGACCCT ACTCGCAACA TCCGCAAGGC AGTGAACACC
GTCATGCTGC GCATCCTGGT GTTCTTTGTG CTGGCCACGT TCTTCATCGT TGTCGCCCAG
CCATGGACCA GCCTGACCCC AGGTAAATCG CCCTTCGTGA CCACGCTGGA ACACATTGGC
ATTCCTGGTG CTGGCGAGAT GCTCACTGCG GTCATTCTGG TTGCCGTGCT GTCAGTGCTC
AACGCCGGCC TCTATACCTC TTCGCGCTTG CTGTTCGTCC TGGCGTCCAA TGACGAGGCG
CCTCGCTGGA TTGCTGGCGT GAACAAAAAA GGTGTGCCGG TTCGTGGCGT GCTTGCCTCC
ACCTTGGTTG GCTATGGCTG CGTGGTCATT GCAGCACTGT GGCCGGATAC GGTGTTCCAG
TTCCTGATCA ACTCCTCGGG CACGGTGTTC TTGTTTGTCT ACCTGATGAT CTGCTTGTCA
CAGCTCAAGC TGCGCCGCAA GTGGGTAGAA GAGGGCAGCC TGAAGTTCGC CATGTGGGCC
CACCCATGGC TGCCGCTGCT GGTCACCGCT TCGATCATCG CCGTCCTGGT CAGCATGGCA
TTCGATCCCT CCATGCAGAT GAGCCTGCTG CAGTGCGTGA TAGCCATCTT CGCCATTGCT
GCTTCGTACC TGGCACTGAG CCTATCTCGC AAGCGTCAGC GAGCCGTCAA AGGCCAGCCC
GTCACCACTG CTTAG
|
|---|
| Protein sequence | MPIQSEHDPR LKRSLKTRHI SMLALGGVIG AGLFVGSSAV ITSTGPGAFL TYAITGIIVA
LVMRMLGEMA AAHPTKGSFV DYARMAFGRP AGYMTGWLYW YFWVIVVGFE AVVGGQIING
WFPDIPVWVI ALGLMISMTL LNMMSVHSFG EAEYWFAGVK VAAIVVFLLV AGAYVFHLWP
NSTASFDNLT QHGGFLPHGV GALFTGVVVV IFSMTGVEVA TLAAAESEDP TRNIRKAVNT
VMLRILVFFV LATFFIVVAQ PWTSLTPGKS PFVTTLEHIG IPGAGEMLTA VILVAVLSVL
NAGLYTSSRL LFVLASNDEA PRWIAGVNKK GVPVRGVLAS TLVGYGCVVI AALWPDTVFQ
FLINSSGTVF LFVYLMICLS QLKLRRKWVE EGSLKFAMWA HPWLPLLVTA SIIAVLVSMA
FDPSMQMSLL QCVIAIFAIA ASYLALSLSR KRQRAVKGQP VTTA
|
|---|
| |