| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1988 |
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| Symbol | |
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| ID | 6110941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2215589 |
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| End bp | 2217883 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641621784 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001748858 |
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| Protein GI | 170721170 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.645033 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGTT GTCTCGGTCG CGGTGTCGTG TTGGTGCTGC TAGCGCTTTC GTGGTACGCC
TCGGGCGCGC AGGTCCCTGA GCTCGCCCAG AACGCTGCCG GCTACGCGCC AGCAGATAGC
TGTGCGGGGT GTCACATTAA ACAAGCCAAG GCCTGGAAAG GCTCTGATCA TGATTGGGCG
ATGCGTGTGG CGGATCCATC CAGTGTATTG GGAGACTTCT CAGGCGTAAT CTTCAGCGAT
GCGGGCGTCG AGACGCGATT TTTCCGCCGT GGTGACCTGT TCTTCACACG TACCGAGGGA
GAAGATGGCA AGCCCGCGGA CTTTCAGATT CGCTATACCT TCGGCCACCG CCCGCTACAG
CAGTATCTGG TAGCCTTTCC TGGTGGCCGG CTGCAAGCCC TGACTGTCGC TTGGGACAGC
AGACCTGCCA GCGCGGGCGG GCAGCGATGG TTTTCCCTTT ATCCTGGTCA GCGTTTTTCT
GCTGGCGATG CACTTCACTG GACCGGGCGA TATCAGAACT GGAATGCCAT GTGTGCAGAT
TGTCATTCCA CGAACCTGCA AAAAGGCTAT GACAGTCAGA GCGATACCTT CGCCACTACC
TGGCATGAGC AGAATGTGGG GTGCCAATCC TGCCACGGCC CAGCGCAATC CCATGTGAAC
TGGGCACGAA AGGCTCAATC GAAAACCCCT CATGACTCAG CTGGCGACGT CGGTCTGCTG
GTGGACTTCT CCGCCCTCGG GGCCCAGGGG CTCATCGAGC AATGCGCTTA CTGCCACAGT
CATCGTGAGG GCCTGGGCGT TGCCCAGCAA CCCGGGCATC CGTCACTCGA TGCAGTGCTT
CCGGCTACGT TGCGGCCAGA TTTGTATCAC GCCGATGGGC AGATCCAGGC AGAAGTGTAC
GTTTACGGCT CTTACACCCA GAGCAAGATG TACGCGGCGG GCGTGACATG CACCGACTGC
CATGATCCAC ACTCCACACG GGTGAAACGC GAGGGCAACA GCCTCTGCCT GCAATGCCAT
AACCCCAAGC CACCGACCGA GCGATTTCCC ACCTTGCTGG CAAAGAACTA CGACAGCCCT
GTCCATCACC ATCACACGCC GTCATCGGCA GGCAGCCAGT GTGTGAACTG TCACATGCCA
GAAGCAACGT ACATGGTCGT GGATCCCCGC CGAGACCACA GTATACGAAT ACCTCGCCCG
GACCTTGCGC GAGCGACAGG CAGCCCAGAC GCTTGCACTC GATGTCACCA GGGCAAGACG
GTTGAGTGGG CAGCTGAAGC GGTCAAGGGT TGGTTTGGCC AACCGCAACG TCCACCTCAC
TACGGTGAAA CCTTTCAGGC GGTGCGTACT CGCAGCGCAG AATCCATAGC CCTGCTTGTC
CAAGTGATCG ATGACCTAGG CAAACCTGCA ATCGTGAGGG CAACGGCGGC TGATCGCCTG
GCTGACTTTG GCGGGGCTGC GCTACCAAGC CTGAGCAAAG CGTTGGAAGA CCACAGCGCA
TTGGTGCGTG CTTACGCGGT AAGTGGTTTT ACGGTGCTTA CCCCGGCGCA GCGGGTTGTG
CATTTGTTGC CGCTACTCAA CGATCCTCTT CGCGCAGTGC GTGACGAAGC CATACGTGCG
TTGGCGGATA TTCCGCTGGC TGCGCTTCCA TCGGCCCGCA GGGCGGGTTT CAGGGCTCAG
TTACAGGAAT ACGAACAACG TTTGCACGCC AATGCCGACT TGCCGGGTAA CCGCTTGAAC
TTGGCTGTGT TCCTGGAGCG TCGCGGTCGC GAACTTGAAG CCATGGAACA GTACCGTCAG
GCCTTGCGCA TGGATCCTTA CTTCTCACCT GCTCGTGTAA ACCTGGCGGC ACTCGCCAGT
AGGACCCTGC ACATGGATGA AGCCGAACGG GTGCTGCGCA AGGGTATTTC TCTGCAGGAC
ATACCGAAGG CAGACCGCGC GAACCTGGCT TACATGCTGG CGCTTTTGCT GGTAGAGCGT
GGTCAGCCTG AGGATGCAGC CGTATATATG GCTGAGGCAG CTGAAGCCGC GCCTCAAAAT
ACCCGGATCC GTTACAACCA AGGGCTGCTT TTGCTGCAGT TGCGCCAATC CGAGGCCGCG
CGCAAGGCCT TGGAAGCCGG CCTGAGTCAG GCGCCGGCCG ATTCCGACCT TCTCTATGCA
TTGATCTACC TACATAGTGT CAGCGGAGGT CGCGAGCAGG CAGTTCGATA TTGGCGACAA
CTCAGACTGG TCTCACCCAA TGATCCTAGG CTTATTCCAT TACGCCGCGA ACTCGGAGTT
TCTGAAGGAG AGTAA
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| Protein sequence | MNRCLGRGVV LVLLALSWYA SGAQVPELAQ NAAGYAPADS CAGCHIKQAK AWKGSDHDWA
MRVADPSSVL GDFSGVIFSD AGVETRFFRR GDLFFTRTEG EDGKPADFQI RYTFGHRPLQ
QYLVAFPGGR LQALTVAWDS RPASAGGQRW FSLYPGQRFS AGDALHWTGR YQNWNAMCAD
CHSTNLQKGY DSQSDTFATT WHEQNVGCQS CHGPAQSHVN WARKAQSKTP HDSAGDVGLL
VDFSALGAQG LIEQCAYCHS HREGLGVAQQ PGHPSLDAVL PATLRPDLYH ADGQIQAEVY
VYGSYTQSKM YAAGVTCTDC HDPHSTRVKR EGNSLCLQCH NPKPPTERFP TLLAKNYDSP
VHHHHTPSSA GSQCVNCHMP EATYMVVDPR RDHSIRIPRP DLARATGSPD ACTRCHQGKT
VEWAAEAVKG WFGQPQRPPH YGETFQAVRT RSAESIALLV QVIDDLGKPA IVRATAADRL
ADFGGAALPS LSKALEDHSA LVRAYAVSGF TVLTPAQRVV HLLPLLNDPL RAVRDEAIRA
LADIPLAALP SARRAGFRAQ LQEYEQRLHA NADLPGNRLN LAVFLERRGR ELEAMEQYRQ
ALRMDPYFSP ARVNLAALAS RTLHMDEAER VLRKGISLQD IPKADRANLA YMLALLLVER
GQPEDAAVYM AEAAEAAPQN TRIRYNQGLL LLQLRQSEAA RKALEAGLSQ APADSDLLYA
LIYLHSVSGG REQAVRYWRQ LRLVSPNDPR LIPLRRELGV SEGE
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