Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1802 |
Symbol | |
ID | 6110753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 2003555 |
End bp | 2005900 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641621598 |
Product | fimbrial biogenesis outer membrane usher protein |
Protein accession | YP_001748675 |
Protein GI | 170720987 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0548904 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.220264 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAATGGC TGTCGCGTGC GACGCGCCGC TGGTGCCTGG GGCTGGCGGT TATCGGCCCC GGCCTGGCGG TGGCCGACGA GCTGCCGCCG CCGCCCACCG AGGCCGCCGC CATTGCCGAC GCCACACTGT ATCTGGACCT GCTGGTGAAC CAGGTGCCCA GGGCTGAGCT GGTACCGGTG CAGCAGCGTG CCGGGGGGCT GTTCCTCGAC AGCCAGGTGC TACGCGCTGC CGGCATCGCC CTGCCGGGCA ATCCGCAAGG CGAGGTGGCC CTGGATGCCG TAGCGGGCCT GCACTGCGAT TACGACAGCC AGAACCAGCG CCTGTTGCTG CAAGTCCCAC CGGCCTGGCT CCCGGACCAG CAAGTCGGCA ACCGTAACCT GTACCCGGCC AGCGATGCAC GCAGCAGTTT CGGTGCGTTG TTCAACTATG ACCTGTACCT CAACGACACC GACGAGGGTG GCACTTACCT GGCTGCGTGG AATGAGCTAC GCCTGTTCGA CAGTTGGGGC ACCTTTGCCA CCACCGGTCA GTGGCGGCAG TCGTTCAACG GCGCCGCGGC CGACGCCAGC CGCCAGGGTT TCCTGCGCTA CGACACTACT TGGCGCTTCA CCGACGAGCA GCGCCTGCTG ACTTACGAAG CGGGCGACTT CGTCACCGGG GCGTTGCCCT GGACCAGTTC GGTACGGGTG GGCGGCCTGC AGTTGTCGCG TGACTTTGCC GTCCGCCCTG ACCTGGTCAC TTATCCGTTG CCTGCCTTCG CGGGAGAGGC GGCGGTGCCG ACCTCACTGG ATCTGTTCAT CAACGGCTAC AAGTCCAGCA CCGCCGAGTT GCAGCCAGGC CCCTACACCC TGACCAACGT GCCGTTCATC AACGGTGCCG GCGAGGCCGT GGTGGTTACC ACCGATGCAC TTGGGCGCCA GGTGTCCACC ACGTTGCCGT TCTACGTCAC CAGCAGCCTG CTGCAAAAAG GCCTTTCGGA TTTCTCGATG GCCGCCGGCA GCCTGCGCCG AGACTATGCA GTGCGCGACT TCAGCTACGG GCCCGGCGTC GCCTCGGCCA GCCTGCGTCA TGGCGTCAGC GATTTCTTCA CCCTCGAAAG CCATGTCGAA ACCGCAGAAT CGTTGCTGCT TGGGGGTTTG GGTGCGAATG TGCGCCTGGG CACTTTCGGT GTACTGAACG CTGCCATGGC GCAGAGCCAG TTCGACAGTG AAAAGGGCCA CCAGGTTGCC CTCGGCTATC AGTACAACAG CCAGCGCCTC GGTTTCAGCT ATCAGCGCTT GCAGCGCCAT GGTCATTACG CCGACCTGAG CCGGGTCGAC AGCCCGGACA TGCAATTGAG CCAGCGTAGC GAGCAGGTCA CCCTGAGCCT GAACCTCGAC CGCTTCGGCA GCCTCGGCGC GGGCTACTTC GATGTGCGCG CCGGTGACGG CTCGCGCACC CGGCTGATCA ACCTGAGCTG GAGCAAACCG CTGTGGGGCA ACAGCAGTGT CTACCTGTCG GCCAACCGTG AGGTCGGCGA CAGCCAGTGG GCGGTGCAGG CACAGTGGGT GATCCCGATC GACTTCAGCG GTACCCTTGC CGTGAGCATG GAACGCAGCA AGGAAGGCGA GGACCTGCAG CGGGTCAACT ACAGCCGTGC GGTACCGGTG GGCGGCGGTG TTGGCTACAA CCTTGGCTAC GCCACCGCAG GTGATCGCGA TGCCTACCGC CAGGCCGACG CCACCTGGCG CCTGCAGTCG GTGCAATTGC AGGCCGGCGT GTACGGCAGC AGCGGCGAAA TGACCCGCTG GGCCGATGCC AGCGGCTCGC TGGTGTGGAT GGACGCCGGG CTGTTCGCCG CCAACCGTAT CGACGATGCC TTTGTGGTGG TCAGCACCGG CGGCTATGCC GATGTGCCCG TGCGTTACGA AAACCAAGAG ATCGGCCGCA CCGACCGCAA CGGCCACCTG CTGGTGCCGT ACAGCAGCGG CTACTACCGC GGCAAGTACG AGATCGACCC CATGGACCTG CCGCCCGATG TGCTCGCGGC GCAGGTGGAG CAGCGGGTAG CGGTGCGCCG TGGCAGCGGC TACTTGCTGG AGTTCCCGCT CAAGCGCGTG CTGGCGGCCA GCATCGAGCT GGTAGATGGC AACCAGCAGC CGCTCAAGCT GGGCAGTACG GTCAGCCACC GTGAAAGTGG CAGCCAGGCG GTGGTGGGCT GGGACGGGCT GGTGTATCTG GAGAACCTCT CAGCGCACAA CCACCTGCAG GTCGGGCTGG AGGGAGGAGG GCAGTGCCAG GTCGAGTTCG ACTTGCCGCA GGCAGAAGGC TCGATCCCGT TGATCGGCCC GTTGGTGTGC CGATGA
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Protein sequence | MKWLSRATRR WCLGLAVIGP GLAVADELPP PPTEAAAIAD ATLYLDLLVN QVPRAELVPV QQRAGGLFLD SQVLRAAGIA LPGNPQGEVA LDAVAGLHCD YDSQNQRLLL QVPPAWLPDQ QVGNRNLYPA SDARSSFGAL FNYDLYLNDT DEGGTYLAAW NELRLFDSWG TFATTGQWRQ SFNGAAADAS RQGFLRYDTT WRFTDEQRLL TYEAGDFVTG ALPWTSSVRV GGLQLSRDFA VRPDLVTYPL PAFAGEAAVP TSLDLFINGY KSSTAELQPG PYTLTNVPFI NGAGEAVVVT TDALGRQVST TLPFYVTSSL LQKGLSDFSM AAGSLRRDYA VRDFSYGPGV ASASLRHGVS DFFTLESHVE TAESLLLGGL GANVRLGTFG VLNAAMAQSQ FDSEKGHQVA LGYQYNSQRL GFSYQRLQRH GHYADLSRVD SPDMQLSQRS EQVTLSLNLD RFGSLGAGYF DVRAGDGSRT RLINLSWSKP LWGNSSVYLS ANREVGDSQW AVQAQWVIPI DFSGTLAVSM ERSKEGEDLQ RVNYSRAVPV GGGVGYNLGY ATAGDRDAYR QADATWRLQS VQLQAGVYGS SGEMTRWADA SGSLVWMDAG LFAANRIDDA FVVVSTGGYA DVPVRYENQE IGRTDRNGHL LVPYSSGYYR GKYEIDPMDL PPDVLAAQVE QRVAVRRGSG YLLEFPLKRV LAASIELVDG NQQPLKLGST VSHRESGSQA VVGWDGLVYL ENLSAHNHLQ VGLEGGGQCQ VEFDLPQAEG SIPLIGPLVC R
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