| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1775 |
|---|
| Symbol | prpB |
|---|
| ID | 6110725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1972365 |
|---|
| End bp | 1973255 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621570 |
|---|
| Product | 2-methylisocitrate lyase |
|---|
| Protein accession | YP_001748648 |
|---|
| Protein GI | 170720960 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.367112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.000175442 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTGA AGAGCACCCC TGGTCAGCGT TTTCGCGATG CCGTTGCCGC CGAACATCCC
CTGCAGGTGG TCGGCGCCAT CAACGCCAAC CATGCGCTGC TGGCCAAGCG CGCCGGCTTC
AAGGCCATCT ACCTGTCCGG TGGTGGTGTC GCCGCCGGTT CGCTGGGCTT GCCGGACCTG
GGCATCACCG GTCTTGATGA CGTGCTGACC GATGTGCGGC GCATCACTGA CGTCTGCGAT
CTGCCCTTAC TGGTAGATGT CGACACCGGC TTCGGGGCCT CGGCATTCAA CGTTGCGCGC
ACTGTGCGTT CGATGAGCAA GTTCGGTGCT GCCGCCATCC ATATCGAAGA CCAGGTAGGC
GCCAAGCGCT GCGGCCACCG TCCGAACAAG GAGATCGTCT CCCAGCAGGA GATGGTCGAC
CGCATCAAGG CTGCGGTCGA TGCGCGTACC GATGACAGCT TCGTGATCAT GGCGCGTACC
GATGCCCTGG CCGTGGAAGG CCTGAACGCA GCGCTGGATC GCGCCGCCGC CTGCATCGAG
GCCGGCGCTG ACATGATTTT CCCTGAAGCC ATCACCGAGC TGCAGATGTA CAAGACCTTC
GCCGACCGGG TGAAGGCGCC GATCCTGGCC AACATTACCG AATTCGGTGC GACGCCGCTG
TTCACCACCC AAGAGCTGGC TGGTGTGGAC GTGTCGTTGG TGCTGTACCC GCTGTCGGCG
TTCCGTGCCA TGAACAAGGC GGCCGAGAAT GTCTACACCG CGCTGCGTCG CGACGGCACG
CAGAAGAATG TGATCGACAC CATGCAGACC CGCATGGAGC TCTACGATGC CATCGGCTAC
CACGCCTTCG AGCAGAGCCT CGATGCGCTG TTTGCGCAGA AAAAAGGTTG A
|
|---|
| Protein sequence | MTVKSTPGQR FRDAVAAEHP LQVVGAINAN HALLAKRAGF KAIYLSGGGV AAGSLGLPDL
GITGLDDVLT DVRRITDVCD LPLLVDVDTG FGASAFNVAR TVRSMSKFGA AAIHIEDQVG
AKRCGHRPNK EIVSQQEMVD RIKAAVDART DDSFVIMART DALAVEGLNA ALDRAAACIE
AGADMIFPEA ITELQMYKTF ADRVKAPILA NITEFGATPL FTTQELAGVD VSLVLYPLSA
FRAMNKAAEN VYTALRRDGT QKNVIDTMQT RMELYDAIGY HAFEQSLDAL FAQKKG
|
|---|
| |