| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1546 |
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| Symbol | |
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| ID | 6110487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1703666 |
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| End bp | 1706962 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641621333 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001748420 |
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| Protein GI | 170720732 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.223692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAT CAGCAAAACG CTTTCCGCGC CTGCCGCGCA TCCCTGCGGC CAATCCTCAG
GAGTCGGAAC AGGCCTGGCA GAACGCCCCG CAACTGCTGG CTGCGCTCAA TGGTGCACGC
CTGGGCGCCT GGCTATGGGA CATCGACAGT GGCAGAGTCA GCTGGTCGCG CGGCACCCAG
GCACTGTTCG GCTTCGATCC GCAGCGCCCC TTGCCCAACG ATATCGATTA CCTCGACCTG
CTGCCGGAAG AAGATCGCGC GCGCACGCGC CAACTGTTCC AGGCAGTGGT CAATGGTGAG
CCGGCCGAGA AAGCCATGCG CCATCGCATC CGCTGGCCGG ACGGCAGCCT GCACTGGCTG
GAAATCAACG GCAGCCTGAC CCACGACCGC CAAGGCCGGC CACAGATGAT CGGGATAATC
CGCGAGATAA CCCGCCAGCG CGAACGGGAA ACCGCACTGA TCAACTCGGA AAAACGCTTT
GCCACCCTGT TTCACCTCAG CCCTAACGCG ATTCTGCTCA CCCGCCGCCA AGACGGCATG
ATTTTCGAAG TCAACCAGCA TTTCGAAGAC ATGTTCGGCT GGCCTGGCGA ACAGGTGATC
GGCAAGACCA GCTTGGAACT TGGCCTCTGG GTAACCCCCG AACAGCGTCA CCAGGTACTG
GATTCGACTC GCTCCAGCAG CGGCCCGACC ATCATGGAGG TGCAGTTGCG TGCCAGCAGC
GGCAAAATCC ACGACGGCAT TCTGTGCACC CAGGGCATCG AACTGGAAGG CGTGACGTTC
CTGCTCAGCA CCTTCGTCGA CACGTCCGAG CGCAAACGTG CCGAGCAAGC GCTCAAGGAT
AGCCAGGAAC GCCTTGATCT GGCCCTGGAC TCGGCGCAAC TGGGCACCTG GGATTGGCAC
ATCCCCAGCG GCATGCTCTA TGGCTCGGCC CGTGCCGCGC AACTGCACGG ACTGGACCCG
ATACCCTTTC ACGAATCGTT CGACGCATTT TTCGAAGGCG TGCCCCAGGA CGAACGCGAT
GGCATGCGCC AGGCCTACCG CAGCCTGCGC GAAGGCCCAG AAGGCAACTA CCAGATCACC
TACCGCGTGC AGCTGGAAAA CGGCGCTTCG CGTTACATCG AAAGCCGAGC ACGCCTGTAC
CGCGACGAGC AGGGTAACCC GCTGCGCATG GCCGGCACCC TTCTGGACAT CACCGATCAG
GTCGAGCGCG AGCTGCGCCT GAGCGCATCG GAAGAGAAGT TCGCCAGCCT GTTCCAGGTC
AGCCCCGATC CGATCTGCGT GACCCGCCAG GACACCGGTC AGTTCATCGA GATCAACCCG
GCCTTCACCC ACACCTTTGG CTGGAGCGCC GAACAGGTGA TCGGCCGCAC CGCCGAAAAG
ATCGGCCTGT GGGCCGAGTC GATCGAACGC GCGCAACGCA TCGAACGGGT TATCCGCGAA
CAGGCCCTGA GCAACGTTGC AGTGGTGGTC AACCACCGCA ACGGCTCACC ACTGACCTGT
GTGATTTCAA GCCGGCTGAT CAGCGTCGAC AACCACCCCT GCAGCGTCAC CACCCTGCGC
GACATCACCC AGCAGCAACG GGCCGAAGCA GCGCTCAAGT CCAGCGAGGA GAAGTTCGCC
AAGGCGTTTC ATTCCAGCCC GGACGCGATC ACCATCACTG AGCGCCACAG CGGCCGCTAT
GTGGAGGTCA ACGATGGGTT CTGCAGGCTG ACCGGCTACA GCACCGCCGA AGTGATCGGC
CACAGTGTCT ACGAGCTGGG TATCTGGGCC GACGACAAGC AGCGCAGCGC TTTGCTCGTC
GAGCTGAAGG AGCGTGGCCG GGTACACCAC CGGGAGATGC TCGGGCGCAC CAAGCGTGGC
GACATCCTCA CCGTGGAGGT ATCGGTCGAG CCGATCAGCC TCAACGAGAC CGATTGCCTG
CTACTCACCG CCCGCGATGT CAGCCAACTG AAGAATGCCC AGGCGCAGAT CCGCCACCTG
GCCTACCACG ACCCACTGAC CAACCTGCCC AACCGCGCCT TGCTGATGGA CCGCCTGAGC
CAACAGATCG CCCTGCTGCG CCGGCACAAC CTGCGCGGCG CCCTGCTGTT CCTCGACCTC
GACCATTTCA AGCACATCAA CGACTCCCTC GGCCACCCGG TGGGCGACAC GGTGCTGAAG
ATCATCACCG CTCGCCTGGA AGCCAGTGTG CGCCTGGAAG ATACGGTGGC ACGCCTGGGT
GGCGACGAAT TCGTGGTACT GCTCAGTGGC CTGGAGGGCA GCCGCGAGGC AGTGGAAAAC
AAGGTTCGCG AGCTGGCCGA TACCCTGCGC GAACTGCTGG CCGAACCTAT GTCGCTGGAC
GGCCAGCGTC TACAGGTAAC CCCGAGCATC GGCGTGGCAC TGATCCCCGA CCACGGCACC
ACCCCCGCCG ACCTGCTCAA ACGCGCCGAC ATCGCCCTGT ACCGCGCCAA GGACTCAGGG
CGCAACACCA CCCAGTTGTT CCATACCACC ATGCAGAAGG CAGCCAGCGA GCGCCTGCGC
ATGGAAAGCG ACCTGCGCCT GGCACTGGCA CGGGGCGAAC TGGCCTTGCA CTTTCAGCCC
CAGGTGGATG CCCGCGACAA CCGCATTGTC GGGGCCGAGG TACTGTTGCG CTGGCATCAC
CCGCAATTGG GCCAGCAACC GCCGGCTCAG TTCATCCAGG TGCTGGAGGA AAGCGGCCTG
ATCCTGGAAG TTGGCAGTTG GATACTCGAC GAAGCCTGTG ACGCTTGCTC GCGCATGCTC
ACAGACGGGT TGATCGATGC CGATGATTTC AGCCTGTGCG TGAACATTAG CCCCCGGCAG
TTTCGCCAGA ACGACTTCGT CCAACGGGTG CTGCGCAGCC TGGACGACTA CCGCCTGCCA
CGGCACATGC TCAAGCTGGA GATTACCGAA GGCATCGTGA TCCAGAACCT GGAAGACACC
ATCAGCAAGA TGCGCGAACT CAAACGCCAT GGGGTGAGCT TCGCCATGGA CGATTTTGGT
ACGGGCTATT CCTCGCTGAC CTACCTCAAG CGCTTGCCGG TGGACGCACT GAAGATCGAC
CAGACCTTCG TGCGCGACGC ACCAGTGGAT TCCAACGACG CCGAGATTGT CCGGGCAATC
GTCGCCATGG CGCGCAGCCT TGACCTGGCG GTGATCGCCG AAGGCGTGGA GCTGACAGAG
CAACTGGAGT TTCTGGAAAG GCTGGGGTGC CACCTGTACC AGGGTTACCT GCACAGCCGG
CCGCTGCCGC TACCGGAGTT CAGGCAGATG CTGCTGGAAG CCCCCGCCGA TTTCTGA
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| Protein sequence | MPKSAKRFPR LPRIPAANPQ ESEQAWQNAP QLLAALNGAR LGAWLWDIDS GRVSWSRGTQ
ALFGFDPQRP LPNDIDYLDL LPEEDRARTR QLFQAVVNGE PAEKAMRHRI RWPDGSLHWL
EINGSLTHDR QGRPQMIGII REITRQRERE TALINSEKRF ATLFHLSPNA ILLTRRQDGM
IFEVNQHFED MFGWPGEQVI GKTSLELGLW VTPEQRHQVL DSTRSSSGPT IMEVQLRASS
GKIHDGILCT QGIELEGVTF LLSTFVDTSE RKRAEQALKD SQERLDLALD SAQLGTWDWH
IPSGMLYGSA RAAQLHGLDP IPFHESFDAF FEGVPQDERD GMRQAYRSLR EGPEGNYQIT
YRVQLENGAS RYIESRARLY RDEQGNPLRM AGTLLDITDQ VERELRLSAS EEKFASLFQV
SPDPICVTRQ DTGQFIEINP AFTHTFGWSA EQVIGRTAEK IGLWAESIER AQRIERVIRE
QALSNVAVVV NHRNGSPLTC VISSRLISVD NHPCSVTTLR DITQQQRAEA ALKSSEEKFA
KAFHSSPDAI TITERHSGRY VEVNDGFCRL TGYSTAEVIG HSVYELGIWA DDKQRSALLV
ELKERGRVHH REMLGRTKRG DILTVEVSVE PISLNETDCL LLTARDVSQL KNAQAQIRHL
AYHDPLTNLP NRALLMDRLS QQIALLRRHN LRGALLFLDL DHFKHINDSL GHPVGDTVLK
IITARLEASV RLEDTVARLG GDEFVVLLSG LEGSREAVEN KVRELADTLR ELLAEPMSLD
GQRLQVTPSI GVALIPDHGT TPADLLKRAD IALYRAKDSG RNTTQLFHTT MQKAASERLR
MESDLRLALA RGELALHFQP QVDARDNRIV GAEVLLRWHH PQLGQQPPAQ FIQVLEESGL
ILEVGSWILD EACDACSRML TDGLIDADDF SLCVNISPRQ FRQNDFVQRV LRSLDDYRLP
RHMLKLEITE GIVIQNLEDT ISKMRELKRH GVSFAMDDFG TGYSSLTYLK RLPVDALKID
QTFVRDAPVD SNDAEIVRAI VAMARSLDLA VIAEGVELTE QLEFLERLGC HLYQGYLHSR
PLPLPEFRQM LLEAPADF
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