| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1477 |
|---|
| Symbol | |
|---|
| ID | 6110406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1615072 |
|---|
| End bp | 1616751 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641621252 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001748351 |
|---|
| Protein GI | 170720663 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.682084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGG AAACCGGCGG ATTCGCCGCT CTCGATCTCA ATCCGAATAT CGTTGCAGCT
GTTCTGGCCA CCGGCTACGA AGAGCCTTCG GCTATTCAGC ATCAATCGAT CCCGATCATC
CTCGCCGGTC ACGACATGAT CGGCCAGGCG CAGACTGGCA CCGGCAAGAC CGCTGCCTTC
GCCCTGCCGA TCCTCAACAA GATCGACGTG AGCAAGCGCG AACCGCAAGC CCTGATCCTG
GCGCCAACCC GTGAGTTGGC GCTGCAAGTA GCCACCGCTT TCGAAACCTA CGCCAAGCAG
ATGCCGGGCG TTAACGTGGT GGCTGTATAC GGTGGTGCCC CGATGGGCCC ACAACTGCGT
GCCATTCGTA ACGGCGCGCA AATCGTCGTG GCCACCCCTG GCCGTCTGTG CGACCACCTG
CGTCGCGACG AAAAAGTCCT GTCCACCGTG CAGTACCTGG TACTGGACGA AGCCGACGAA
ATGCTCAAGC TGGGCTTCAT GGATGACCTC GAAGTGATCT TCGATGCCAT CCCGGCCAGC
CGTCAGACTG TACTGTTCTC CGCTACCCTG CCTTCGTCGA TCCGCTCGAT CGCCGAACGT
CACCTGCGTG AGCCCAAGCA CGTCAAGATC CAGAGCAAGA CCCAGACCGT AACCGCGATC
GACCAGGCTC ACCTGATGGT GCACGCCGAC CAGAAGATCC CGGCTGTTCT GCGTTTGCTG
GAAGTGGAAG AGTTCGACGC GCTGATCGCC TTCGTGCGTA CCAAGCAAGC CACCCTGGAC
CTGGCCGCCG CCCTGGAAGC CAAAGGCTAC AAGGCTGCTG CGCTGAACGG CGACATCGCC
CAGAACCAGC GTGAGCGCGT CATCGACTCG CTCAAGGACG GCCGCCTGGA CATCGTCGTC
GCCACTGACG TCGCTGCCCG TGGTCTGGAC GTACCGCGCA TCACCCACGT GTTCAACGTG
GACATGCCGT ACGACCCGGA GTCCTACGTG CACCGTATCG GCCGTACCGG CCGTGCCGGT
CGCGAAGGCC GTGCACTGCT GCTGGTCACC CCGCGTGAGC GCCGCATGCT GCAGGTCATC
GAGCGCGTTA CCGGGCAAAA GGTTGCCGAA GCGCGCCTGC CGAACGCTCA GGCCGTGCTG
GATGCGCGTA TCAAGAAGCT GACCTCGAGC CTGGCGCCGC TGGTAGCCGA AGCAGAAGCC
ACTCACGGTG AACTGTTCGA CCGCCTGACC GAAGCCCTGG GTTGCAGCCC GCGTGCCCTG
TCCGCAGCAC TGCTGCGCAA GGCCACCAAT GGCCAGGCGC TGGACCTGGC AGCGGTAGAG
CGCGAGCAGC CGCTGGTACC AAGCTTCGCA CCGCGCGGTG AGCGCCCGGA GCGTGGTGAC
CGTGCCGAGC GTAGCGACCG TGGTGAGCGC GAGCGTCGTG CGCCACTGCC GCTGGCCGAA
GGCCGCGTGC GTTGCCGTAC CGCGCTGGGT GCCCGTGATG GTATCGCTGC CAAGAACCTG
CTGGGTGCGA TCCTCAACGA AGGTGGCCTG GCCCGTGATG CGATCGGTCG CATCCAGGTG
CGTGACAGCT TCAGCCTGAT CGAGCTGCCG GAAGACGGCC TCGAGCGCCT GCTGACCAAG
CTCAAGGACA CCCGCGTGGC TGGCAAGCAG CTGAAGCTGC GTCGCTACCG CGAAGATTGA
|
|---|
| Protein sequence | MTQETGGFAA LDLNPNIVAA VLATGYEEPS AIQHQSIPII LAGHDMIGQA QTGTGKTAAF
ALPILNKIDV SKREPQALIL APTRELALQV ATAFETYAKQ MPGVNVVAVY GGAPMGPQLR
AIRNGAQIVV ATPGRLCDHL RRDEKVLSTV QYLVLDEADE MLKLGFMDDL EVIFDAIPAS
RQTVLFSATL PSSIRSIAER HLREPKHVKI QSKTQTVTAI DQAHLMVHAD QKIPAVLRLL
EVEEFDALIA FVRTKQATLD LAAALEAKGY KAAALNGDIA QNQRERVIDS LKDGRLDIVV
ATDVAARGLD VPRITHVFNV DMPYDPESYV HRIGRTGRAG REGRALLLVT PRERRMLQVI
ERVTGQKVAE ARLPNAQAVL DARIKKLTSS LAPLVAEAEA THGELFDRLT EALGCSPRAL
SAALLRKATN GQALDLAAVE REQPLVPSFA PRGERPERGD RAERSDRGER ERRAPLPLAE
GRVRCRTALG ARDGIAAKNL LGAILNEGGL ARDAIGRIQV RDSFSLIELP EDGLERLLTK
LKDTRVAGKQ LKLRRYRED
|
|---|
| |