| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1460 |
|---|
| Symbol | |
|---|
| ID | 6110389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 1599231 |
|---|
| End bp | 1601369 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641621235 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001748334 |
|---|
| Protein GI | 170720646 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0192209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGC CACACCCCCG CCTGCCCCTG AGCCTGCTCA GCCTGGGCCT GGCCCTGCAC
AGCCCCCACG GTTTGGCTCA AGACAGTGTC ACGCTCGCCC CGGTAGAGGT TTCCGACACC
TACGGCAACG ACAACTATCA GGTAACTGAA GCCGCGGCAG GCGGGTTTCA GCCAGCCCCC
GTGCTCGATA CCCCGGCGTC GGTCAGTGTT TTCAACCAGC AACTGATCGA AGACCGCCAG
GTACGCAAGC TCAGCGAAGT GCTGCAAAGT GATGCCTCGG TCGGCGAAAG CTACGCCCCG
ATCGGCTATT ACGAAAACTT CAACGTGCGC GGCTTCGAAC TCAATGCCGC CAGCAGCTAC
CGCATCAATG GCCAGACCAT CGCCGGCGAA CAGAACGTGG CGCTGGAAAA CAAGCAGCAA
GTCGAACTGC TCAAGGGCCT GTCGGGCCTG CACAGTGGCG TATCGGCGCC TGGCGGGCTG
ATCAATTACG TGACCAAGCG CGCCGAGGAT GTGCGCAGCG TAACGGTATC GACCAACGAA
CAGGGCGAGC GCTACCTGGC CACCGACCTG GGCGGCTGGT TTGGCAGTGA ACGGCAGTTC
GGCCTGCGCG CCAACCTCGC CCACGAAGAT ATCCGCTCGT ACGTCGACCA TGCCGATGGC
AAGCGCGACT TTGCCTCGCT GGCGTTCGAC TGGCTGATAA ACCCCGATGC CACCTTGCAG
CTCGATGCCG AGTACCAGCA CCGCGAACAG CGCTCGGTGC CGGGCTATCA ACTGCTTGGC
GGCAGCGAAG TACCGCACGG CATCGACCCG GATGACCGCC TGGCTTACCA GCACTGGGCC
AAGCCGGTGC AGAACGATTC ACTGAACCTG GGCGGGCGTT TCCAGTACCG CTTCAACGAT
ACCTGGAGCG GCACCCTGAG CGCCTCGCGC AGCAAAGTGG TGATCGATGA CTACAGCTCG
TTCGCCTGGG GCAGCGAAGA CGGCTGGCAG TCGCACTTCA GCCCGGAAGG CGACTACGAC
ATCTACGACT TCCGCAGCCC TGACGACACC CGCCGCACCG ATGAAGCGCA AGCGATGCTC
GACGGCCACT TCGACGCGCT CGGCGTGAGC CATGAGCTGA CGGTGGGTGC CAGCGCACAA
CGCCGCACGC TGGATCAGCG CCCCTACTAC AACCAGCTGG TCGGTAGCGG CAACATCTAC
ACCGGCGCCC CCGCCGTGGC GCCATCGGAC CTGCCGGTCG GTGCCAGCGA GCGGCGCCTG
GACAGCCGCC AGTACGGCCT GTTCGTCAAC GACCGCATCA CCTTCAGCGA GCAGTGGCAG
GCCGTGCTCG GCGCCCGCGA AGTGCGCCTG GACGAAAAGA CCTGGGACGA AAACGGCCGG
GCCGGGCGCC ATACCCGGCA GTACCAGTTG CTGCCCAATG CCGCGCTGAT CTACAAGCCG
CGCCAGGACA CCACCGTGTA TGCCAGCTAC TCCAAGGGCC TTTCCGCAGG GGGTACCGCG
CCCTGGTACG CCAGCAACGC GGCAGAAATC CTCGCCCCGA CCCTGTCGCA TCAGCTTGAG
CTGGGCATCA AGCGCGACTG GCAGGGCATG AGCTTCAGCG CCGCGCTGTT CCAGATCCGC
CAGGCCTATC AATACGCCCG CCCTGAAGGC GACGGCAGCT TCACCTACGT GCAGCAGGGC
CAGCAGAAGA ACATCGGCCT GGAACTGGGC GCCAGCGGCT GGGTAACCTC GAACCTGCAA
ATCCAGGCCA GCGCCGCAGC GATTCGCGCG CGCGTGAAGA ACAGCGGTAC CGATGCCTAC
GAAGACCATC AGGCGATCAA CGTGCCGCGC CTGCGCGCAG CCCTGCAAGC CGACTACAGC
CTGCCGGTGC CGGGCCTGGC CCTGCTGGGC GGGGCACGTT ACAGCGCCAG CAAGTATGCG
AGCCAGGCGG GGAATGTGCA GGTGGGCGGC TATACCGTGT TTGATGTGGG AAGCCGCTAT
CGCACGCGTA TCGGCGGCTA TGACACGGTG CTGCGCCTGA CCGTGGATAA CGTGTTCGAC
AAACGCTACT GGCGGGATGT GGGGGATTAC CTGGGGGACA ACTACCTGTT CCAGGGCGCG
CCGAGGACGG CACGGGTGTC GGCTTCGGTG AGTTTCTAG
|
|---|
| Protein sequence | MPLPHPRLPL SLLSLGLALH SPHGLAQDSV TLAPVEVSDT YGNDNYQVTE AAAGGFQPAP
VLDTPASVSV FNQQLIEDRQ VRKLSEVLQS DASVGESYAP IGYYENFNVR GFELNAASSY
RINGQTIAGE QNVALENKQQ VELLKGLSGL HSGVSAPGGL INYVTKRAED VRSVTVSTNE
QGERYLATDL GGWFGSERQF GLRANLAHED IRSYVDHADG KRDFASLAFD WLINPDATLQ
LDAEYQHREQ RSVPGYQLLG GSEVPHGIDP DDRLAYQHWA KPVQNDSLNL GGRFQYRFND
TWSGTLSASR SKVVIDDYSS FAWGSEDGWQ SHFSPEGDYD IYDFRSPDDT RRTDEAQAML
DGHFDALGVS HELTVGASAQ RRTLDQRPYY NQLVGSGNIY TGAPAVAPSD LPVGASERRL
DSRQYGLFVN DRITFSEQWQ AVLGAREVRL DEKTWDENGR AGRHTRQYQL LPNAALIYKP
RQDTTVYASY SKGLSAGGTA PWYASNAAEI LAPTLSHQLE LGIKRDWQGM SFSAALFQIR
QAYQYARPEG DGSFTYVQQG QQKNIGLELG ASGWVTSNLQ IQASAAAIRA RVKNSGTDAY
EDHQAINVPR LRAALQADYS LPVPGLALLG GARYSASKYA SQAGNVQVGG YTVFDVGSRY
RTRIGGYDTV LRLTVDNVFD KRYWRDVGDY LGDNYLFQGA PRTARVSASV SF
|
|---|
| |