| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1234 |
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| Symbol | cobD |
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| ID | 6110158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1365561 |
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| End bp | 1366469 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641621004 |
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| Product | cobalamin biosynthesis protein |
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| Protein accession | YP_001748108 |
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| Protein GI | 170720420 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
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| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.778235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGTCG CCTTGCTGAC CGTGGCCGGC GTGGCCCTGG ATGCATTGTT CGGCGAGCCG
CAGCGGCGCC ATCCGCTGGT GGCCTTCGGT AACCTGGCGT CGAGCCTGGA GCAGCGCCTG
AATGCCGGTG GGCGCGGTTG GCGCAGCCAT GGCGTGAGTG CCTGGTTCCT GGCAGTGGTG
CCCTTGACTC TGGTGGCGCT GATTCTCTCC TGGCTGCCCT ATATTGGCTG GCTGGTAGAC
GTGCTGGCGC TGTATTGCGC GCTGGGCCTG CGCAGCCTTG GCGAGCATGT GCTGCCGGTA
GCCAGTGCCT TGCGCCAGGG TGATCTGGAG GAGGCGAGGC GCCGCGTCGG TTACCTGGTC
AGCCGCGAGA CCCGCGAGCT CGATGAGCCG GCCGTGGCCA GGGCCGCAAC CGAATCGGTG
CTGGAGAACG GCAGCGATGC GGTGTTCGCC GCGCTGTTCT GGTTCATCGT GGCCGGCGCT
CCGGGCGTGG TCCTGTACCG CCTGAGCAAT ACTCTGGATG CCATGTGGGG CTACCGCAAT
GAACGTTTTG AACGCTTCGG GTGGTGCGCG GCGCGCATCG ACGATGTACT CAACTATGTT
CCCGCAAGGC TGGTGGCACT GACCTACGCC TTGCTCGGCA AAACCCGCCT GGCCCTGGCC
TGCTGGCGCA ACCAGGGGCC GTTGTGGGAC AGCCCCAACG CCGGGCCGGT GATGGCGGCC
GGTGCCGGTG CGCTGGGTGT CGAACTCGGT GGCCCGGCGG TGTATCACGG CGAGCTGCAC
GAGCGCCCGC GCCTGGGCGA AGGGCCGATG GCCGATGCCG GTGCCATCGA GCGCGGCTGG
GCCCTGGTGC AGCGTGGCGT GTGGTTGTGG TTGCTGGTGA TCTGCGTGGG AGCCTACTGC
AATGCTTGA
|
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| Protein sequence | MSVALLTVAG VALDALFGEP QRRHPLVAFG NLASSLEQRL NAGGRGWRSH GVSAWFLAVV
PLTLVALILS WLPYIGWLVD VLALYCALGL RSLGEHVLPV ASALRQGDLE EARRRVGYLV
SRETRELDEP AVARAATESV LENGSDAVFA ALFWFIVAGA PGVVLYRLSN TLDAMWGYRN
ERFERFGWCA ARIDDVLNYV PARLVALTYA LLGKTRLALA CWRNQGPLWD SPNAGPVMAA
GAGALGVELG GPAVYHGELH ERPRLGEGPM ADAGAIERGW ALVQRGVWLW LLVICVGAYC
NA
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