Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1216 |
Symbol | rumA |
ID | 6110140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 1347523 |
End bp | 1348881 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641620986 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001748090 |
Protein GI | 170720402 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.374519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGAA AGAAAAGTAA CAGCGGCCTG CGCTTTCAGC CGGCCGGCGG TAACCGCACG CCCCAGGTCC CCGTGGGCAA AAAGCAGCGC CTGGAGATCG AGCGCCTGGC CGGTGACGGC CGCGGCATCG CTTTCCACGA CGGGCGCACC TGGTTCGTCA GCGGCGCCCT GGCCGGTGAG GCGGTGGAGG CGCGGGTGCT CAATGCCCGT GGCAAGGTAG TCGAGGCTCG CCTGGAGCGT GTGCTGCAGG CCAGCCCCGA GCGCCGCCAG GCGCCGTGCC GCCATTACGA ACGTTGTGGT GGTTGCAACT TGCAGCACCT GCCGCATGAG GCGCAGCTGG CGCTCAAGCA ACGTACCCTG GCCGAACAGC TGCAACGGGT TGCCGGTGTG CAACCGCAAG AATGGGCGGC GCCATTGAGC GGGCCGGAAT TCGGCTATCG GCGTCGGGCA CGTGTAGCCG TGCGCTGGGA TGTGAAAGCG CGTCAGCTGG AGGTAGGGTT CCGTGCCGAG GCCAGCCAGG ACATCGTCGC CATCGACGAC TGCGCCGTGC TGGTACAGCC TTTGCAGTCG ATTCTGCGGC ATCTGCCTAC CGTGCTGCGT TCGTTGGGCA AGCCCCAGGC CATCGGCCAC GTCGAGCTGT TCAGCGGCAC GGCCGAAGCG CTACTGGTAC GCCACGTGGC ACCGTTGCCG GCCGATGACC TGGCGCGTCT GCAGGCATTC TGCAACGAGG CCAAGGCGCA GCTGTGGCTG CAGGGTGAAG GTGAACCGGC GCCGGTGGAT GCTGGCACGA AGCTGGGCTT CACCTTGCAG CCTTGGCAGT TGGAGCTGGC CTGGCGCCCG GGCGATTTCG TTCAGGTCAA CGCCCAGGTC AACACCGCAA TGATCGAGCA GGCTCTGGCC TGGCTCGCTC CGCAGGCCGA TGAGCGAGTG CTCGACCTGT TCTGTGGCCT GGGCAATTTC GCCCTGCCGC TGGCCCGCCA AGCGCGGGAA GTGGTGGCGG TCGAAGGAGT GCAGGCGATG GTTGATCGTG CTGCGGCCAA TGCCAGAAAC AACAATGTGC ATAACGCACG GTTTTTTCAG GCCGATTTAT CGCAGCCTTT GGCAGGCGCC GGATGGGCCG CCGAGGGCTT TTCTGCGGTA CTCTTGGATC CACCGCGCGA CGGTGCTTTC GAGGTGGTGC AAGGCATCGC ACGCCTCAAG GCCAAGCGGC TGGTTTATGT ATCATGCAAC CCGGCCACGC TGGCGCGAGA CGCCCAGGTA CTGGTTGGCC AAGGGTACCG GTTAAAAAGG GCCGGGATTC TCGACATGTT TCCTCAGACG GCGCATGTCG AGGCCATGGC GTTATTCGAA GCGGGCTAG
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Protein sequence | MSRKKSNSGL RFQPAGGNRT PQVPVGKKQR LEIERLAGDG RGIAFHDGRT WFVSGALAGE AVEARVLNAR GKVVEARLER VLQASPERRQ APCRHYERCG GCNLQHLPHE AQLALKQRTL AEQLQRVAGV QPQEWAAPLS GPEFGYRRRA RVAVRWDVKA RQLEVGFRAE ASQDIVAIDD CAVLVQPLQS ILRHLPTVLR SLGKPQAIGH VELFSGTAEA LLVRHVAPLP ADDLARLQAF CNEAKAQLWL QGEGEPAPVD AGTKLGFTLQ PWQLELAWRP GDFVQVNAQV NTAMIEQALA WLAPQADERV LDLFCGLGNF ALPLARQARE VVAVEGVQAM VDRAAANARN NNVHNARFFQ ADLSQPLAGA GWAAEGFSAV LLDPPRDGAF EVVQGIARLK AKRLVYVSCN PATLARDAQV LVGQGYRLKR AGILDMFPQT AHVEAMALFE AG
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