| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1025 |
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| Symbol | |
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| ID | 6109943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1127309 |
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| End bp | 1130461 |
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| Gene Length | 3153 bp |
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| Protein Length | 1050 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641620789 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001747899 |
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| Protein GI | 170720211 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.406583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAAGT TCTTTATCGA TCGCCCGATC TTCGCCTGGG TGATCGCCTT GGTGATCATG
CTGGTCGGCG CTCTGTCGAT CCTGAAGCTG CCGATCAACC AGTACCCAAG CATCGCGCCG
CCGGCCATCG CCATCTCCGT GACTTACCCG GGCGCCTCGG CGCAAACCGT GCAGGACACC
GTGGTGCAGG TGATCGAGCA GCAGCTCAAC GGTATCGACA ACCTGCGTTA TGTGTCCTCG
GAGAGCAACT CCGACGGCAG CATGACCATC ACCGCCACCT TCGAGCAGGG CACCAACCCT
GATACCGCAC AGGTCCAGGT ACAGAACAAG CTGAACCTGG CCACCCCACT GCTGCCGCAG
GAAGTGCAGC AGCAAGGTAT CCGCGTCACC AAGGCAGTGA AGAACTTCCT GATGGTGATC
GGCCTGGTGT CCGAAGACGG CAGCATGACC AAGGATGACC TGGCCAACTA CATCGTTTCC
AACATGCAGG ACTCGATTTC GCGCACGGCA GGTGTCGGTG ACTTCCAGGT GTTCGGTGCA
CAGTACGCCA TGCGTATCTG GCTCGATCCG GCCAAGCTGA ACAAGTTCCA GCTGACCCCG
GTCGACGTCA GAACCGCGGT CGCCGCGCAG AACGTGCAGG TCTCGTCCGG CCAGCTCGGT
GGCCTGCCTG CCATGCCGGG CACCCAGCTG AACGCCACCA TCATCGGCAA GACCCGCCTG
CAGACCGCCG AGCAGTTCGA AAATATCCTG CTCAAGGTCA ACAGCGACGG TTCGCAGGTT
CGCCTGCGCG ATGTTGCCCA GGTCGGCCTG GGCGGCGAAA ACTACGCCAT CAGCGCCCAG
TTCAACGGCA AGCCGGCCTC GGGCCTTGCG GTCAAGCTGG CGACCGGCGC CAACGCCCTG
GATACCGCCA CGGCCCTGCG CAAGACCATC AGCGACCTGG AGCCGTTCTT CCCGCCAGGG
GTCAAGGCGG TGTTCCCGTA TGACACCACG CCGGTGGTCA CCGAATCGAT CAGCGGGGTT
ATCCACACCC TGATCGAAGC CGTGGTCCTG GTATTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CCACCATCAT TACCACCATG ACCGTACCGG TGGTATTGCT GGGTACCTTC
GGCATCCTTG CCGCAGCGGG CTTCAGCATC AACACCCTGA CCATGTTCGC CATGGTCCTG
GCCATCGGCT TGCTGGTGGA CGACGCCATC GTCGTGGTGG AGAACGTCGA ACGGGTCATG
TCCGAGGAAG GCTTGCCGCC CAAAGAGGCG ACCAAGCGGT CGATGGAGCA GATCCAGGGC
GCGCTGGTGG GTATCGCCCT GGTACTGTCG GCAGTGCTGC TGCCGATGGC CTTCTTCGGC
GGCTCCACGG GTGTGATCTA CCGTCAATTC TCCATCACCA TCGTCTCGGC CATGGGCCTG
TCGGTGCTGG TGGCGCTGAT CTTCACCCCG GCGCTTTGCG CCACCATGCT CAAGCCACTT
AAAAAGGGCG AGCACCATGT GGCCAAAAGT GGCTTCTTCG GCTGGTTCAA CCGCAACTTC
GACCGCAGCG TAAACGGCTA CGAGCGCAGC GTTGGTACCA TCCTGCGCAA CAAGGTGCCG
TTCCTGCTGG GCTACGCCTT GATTGTCGTG GGCATGATCT GGCTGTTCAC CCGCATCCCT
ACCGCGTTCC TGCCTGAGGA AGACCAGGGC GTATTGTTCG CCCAGGTTCA GACCCCGGCC
GGTTCCAGTG CCGAGCGCAC CCAGGTGGTG ATTGACCAGA TGCGTGAGTA CCTGCTCGAG
GACGAAGCCG ATACCGTATC GTCGGTGTTC ACCGTCAACG GCTTCAACTT CGCCGGTCGC
GGGCAAAGTT CGGGCATGGC GTTCATCATG CTCAAGCCGT GGGACGAACG CTCCAAGGAG
AACAGCGTGT TCGGCCTGGC CGAGCGTGCC CAGCAGCACT TCTTCAGCTT CCGTGATGCG
ATGGTGTTCG CCTTTGCTCC ACCTGCGGTA CTGGAGTTGG GTAACGCCAC CGGCTTCGAC
GTATTCCTCC AGGACCGTGG CGGTGTCGGC CATGCAAAAC TGATGGAAGC GCGCAACCAG
TTCCTGGCCA AGGCTGCCCA GAGCAAGGTG CTCAGCGCCG TGCGTCCGAA CGGCCTGAAC
GATGAGCCGC AGTACCAGCT GACCATTGAT GACGAACGTG CCAGCGCCCT GGGCGTGACC
ATCTCCGACA TCAACAACAC CCTGTCGATT GCCTTGGGTG CCAGCTACGT CAACGACTTC
ATCGACCGCG GCCGGGTCAA GAAGGTGTAC ATCCAGGGTG AACCAAACGC CCGGATGAGC
CCGGAAGACC TGCAGAAGTG GTACGTGCGC AACGGTGCAG GCGAGATGGT ACCGTTCTCC
TCCTTCGCCA CCGGTGAATG GACCTACGGT TCGCCCAAGC TGTCGCGCTA CAACGGTGTC
GAGGCGATGG AAATCCTCGG TGCACCGGCC CCAGGCTACA GTACCGGTGA AGCCATGGCC
GAGGTGGAGC GTATCGCTGG CGAACTGCCG GACGGCATCG GCTACTCCTG GACCGGCATG
TCCTACGAGG AAAAGCTCTC CGGCTCGCAA ATGCCGGCAC TGTTCGCCCT CTCGGTCCTG
TTCGTGTTCC TGTGCCTGGC AGCACTGTAT GAAAGCTGGT CGATCCCGAT CGCCGTGGTG
CTGGTAGTAC CACTGGGCAT CATCGGTGCA TTGATCGCCA CCAGCCTGCG TGGCCTGTCC
AATGACGTGT ACTTCCTGGT CGGTCTGTTG ACCACCATCG GCCTGGCGGC GAAGAACGCG
ATCCTGATCG TGGAATTCGC CAAGGAACTG CACGAACAAG GCAAAAGCCT GTATGACGCA
GCGATCGAGG CATGCCGCAT GCGTCTGCGC CCGATCATCA TGACCTCGCT GGCATTCATC
CTCGGCGTGG TACCGTTGAC CATTTCCAGC GGCGCTGGCG CGGGCAGCCA GCATGCCATC
GGTACTGGGG TAATCGGCGG CATGATCAGT GCGACCGTGC TGGCCATCTT CTGGGTACCG
TTGTTCTTCG TCGCAGTGTC GTCGCTGTTC GGCAGCAAAA AGCCGGAAAA GGACGCCACC
CCTGAAACTC CACGCTATGA GGCTGGGCAA TGA
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| Protein sequence | MSKFFIDRPI FAWVIALVIM LVGALSILKL PINQYPSIAP PAIAISVTYP GASAQTVQDT
VVQVIEQQLN GIDNLRYVSS ESNSDGSMTI TATFEQGTNP DTAQVQVQNK LNLATPLLPQ
EVQQQGIRVT KAVKNFLMVI GLVSEDGSMT KDDLANYIVS NMQDSISRTA GVGDFQVFGA
QYAMRIWLDP AKLNKFQLTP VDVRTAVAAQ NVQVSSGQLG GLPAMPGTQL NATIIGKTRL
QTAEQFENIL LKVNSDGSQV RLRDVAQVGL GGENYAISAQ FNGKPASGLA VKLATGANAL
DTATALRKTI SDLEPFFPPG VKAVFPYDTT PVVTESISGV IHTLIEAVVL VFLVMYLFLQ
NFRATIITTM TVPVVLLGTF GILAAAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLPPKEA TKRSMEQIQG ALVGIALVLS AVLLPMAFFG GSTGVIYRQF SITIVSAMGL
SVLVALIFTP ALCATMLKPL KKGEHHVAKS GFFGWFNRNF DRSVNGYERS VGTILRNKVP
FLLGYALIVV GMIWLFTRIP TAFLPEEDQG VLFAQVQTPA GSSAERTQVV IDQMREYLLE
DEADTVSSVF TVNGFNFAGR GQSSGMAFIM LKPWDERSKE NSVFGLAERA QQHFFSFRDA
MVFAFAPPAV LELGNATGFD VFLQDRGGVG HAKLMEARNQ FLAKAAQSKV LSAVRPNGLN
DEPQYQLTID DERASALGVT ISDINNTLSI ALGASYVNDF IDRGRVKKVY IQGEPNARMS
PEDLQKWYVR NGAGEMVPFS SFATGEWTYG SPKLSRYNGV EAMEILGAPA PGYSTGEAMA
EVERIAGELP DGIGYSWTGM SYEEKLSGSQ MPALFALSVL FVFLCLAALY ESWSIPIAVV
LVVPLGIIGA LIATSLRGLS NDVYFLVGLL TTIGLAAKNA ILIVEFAKEL HEQGKSLYDA
AIEACRMRLR PIIMTSLAFI LGVVPLTISS GAGAGSQHAI GTGVIGGMIS ATVLAIFWVP
LFFVAVSSLF GSKKPEKDAT PETPRYEAGQ
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