| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0578 |
|---|
| Symbol | |
|---|
| ID | 6109487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 633261 |
|---|
| End bp | 635144 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641620335 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_001747452 |
|---|
| Protein GI | 170719764 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGCGAT CGAGGGCGCA GCCCTCGCAA CTGGTACTGC CCATGAAAAC CTCAACCTTC
GCCACCCTGC TCTGCCTGCC CCTGCCGCTT CTGGCCGCCG AACGCGACGA CGCCCTGAAG
CTCCCCGACG TGCTGATCAG CGCCAACCGC CAGGTCGAAT CACGCACCGC CACCAGCGCA
GCCAACACCG TCTTCACCCG CAACGACATC GACCGCCTGC AACCCACCAG CGTCACCGAC
CTCCTCGCAC GCGTGCCCGG CGTGCAAGTC GCGCCCACCG GTGGCCGCGG TAGCCTGCCG
GGTATCTTCA TCCGCGGCAC CAAGGCCGCC CAGAGCCTGG TGCTGGTCGA CGGCGTGCGC
ATCGCCAACG CCACCTCGGG CGACAGCGGC CTGCAGTTTC TCGACGTCGA CCAAATCGAA
CGTGTCGAAG TGCTGCGCGG CTCACGCTCG GCGATCTACG GTAGCGATGC CATCGGCGGT
GTCATTCAGA TCTTCACCCG TCGCAGCAAC GGCACGGGCC TGCAGCCGCG CCTGCGCATG
GCAGCAGGCA GCAACCAGAC CTGGCAACGT AGCCTGGGCC TGTCCGGAGG CGACGGCGCG
ACCCGCTTCA ACCTGGGCGC CAGCCTGGAC GAAACGGCAG GCATCGACTC GACCGGCCCG
TCCTTTGCCA GCGACGGCGA TCATGACGCC TACCGCAACA AGTCGTTCAA CCTGAGCCTG
AGCCACACCT TTGGCGAACG TTTCGAAACC GGCCTGAACC TGCTCGACAG CCGAGGGCGA
CATGAGTACG ACGAGCCTCG CGGCCTCAGT CCACAAGAGC CCTATTCGCA CTTCGCCGTC
AGCACCATCG GCATCTACCT GGATGCACAA CTGACCGACC AATGGAACAG CCGCGTGGAG
CTGGCCCACA GCGAGAACCG CGACGACAGC CGAGACAAGC TCAGCCATTC CAGCTTCCCG
TTCAATACCT ATCGCGACCA GGCCACTTGG CAGAACAGCC TGACGGTGGA TGAACGCAAC
AGTGTGCTAC TAGGCGGCGA CTGGTACGAA GACCGCGTCC ATTCAAGTAC CGACTTCAAA
GAAGACAGCC GCTGGAATCG CGCTATTTTC GCCCAGCACC GCTTTCAGGG TGACAACTTC
TCAACCGAGC TGGGTCTGCG CCACGACGAG AATGAGCAGT TCGGTGGGCA GACCACATGG
AGCAGTACCC TGACCTTACC GCTCAACGAG GCTAACGATG TACTGGTGTC ATACAGCGAA
GGCTTCCGGG CCCCAACTTT CAACGACCTC TACTTTCCCG GCTACAACAA CCCTGACCTC
CAGCCCGAGC ACTCGAAGAG TTACGAGCTG CAGTGGCGTA GCCAACTAAA CGGAAGCAGC
AGGCTGGAAG CATCGCTGTA TCGCACGGAC CTGCGCGACG CGATCGAGTA CAGCATGCAA
CCGGAGAATG TCGGCTCCGC CCGCATCAAC GGCTTTGAGA TGGCCTTGAA CCAAGAATGG
AACGGCTGGA CGTCGCAGAT CGGCCTCGCC CTAGTCGACC CGCGCAACCG TGATAACGGT
CATACCCTAT CTCGCCGGGC ACGACGGACC TTGAGCCTGG ACATAGACCG TAAGTTTGAC
CGCTTCAGCA TTGGCGCGGG TTGGCAAGCA GTGAGCAGCA GTTACAACGA CGAAGCAAAC
ACCGATCCCA TCAGTGGTTA CGGCTTACTG GGCTTGCGCA CAAGTTGGGC GGCAAGCCGC
GAGCTGAAGT TCGACCTGAA ACTGGACAAC CTGCTGGATA GGCGGTACAG CCGCACCCAT
TACAACTACC AGGGCGCCAG CTACGGCTAC CGCGAAGAGG GCCGCACGGC CCTGTTCAGC
GTCACCTGGA CGCCGGCGCT TTAG
|
|---|
| Protein sequence | MSRSRAQPSQ LVLPMKTSTF ATLLCLPLPL LAAERDDALK LPDVLISANR QVESRTATSA
ANTVFTRNDI DRLQPTSVTD LLARVPGVQV APTGGRGSLP GIFIRGTKAA QSLVLVDGVR
IANATSGDSG LQFLDVDQIE RVEVLRGSRS AIYGSDAIGG VIQIFTRRSN GTGLQPRLRM
AAGSNQTWQR SLGLSGGDGA TRFNLGASLD ETAGIDSTGP SFASDGDHDA YRNKSFNLSL
SHTFGERFET GLNLLDSRGR HEYDEPRGLS PQEPYSHFAV STIGIYLDAQ LTDQWNSRVE
LAHSENRDDS RDKLSHSSFP FNTYRDQATW QNSLTVDERN SVLLGGDWYE DRVHSSTDFK
EDSRWNRAIF AQHRFQGDNF STELGLRHDE NEQFGGQTTW SSTLTLPLNE ANDVLVSYSE
GFRAPTFNDL YFPGYNNPDL QPEHSKSYEL QWRSQLNGSS RLEASLYRTD LRDAIEYSMQ
PENVGSARIN GFEMALNQEW NGWTSQIGLA LVDPRNRDNG HTLSRRARRT LSLDIDRKFD
RFSIGAGWQA VSSSYNDEAN TDPISGYGLL GLRTSWAASR ELKFDLKLDN LLDRRYSRTH
YNYQGASYGY REEGRTALFS VTWTPAL
|
|---|
| |