| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0507 |
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| Symbol | |
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| ID | 6109415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 555006 |
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| End bp | 557126 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641620263 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001747381 |
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| Protein GI | 170719693 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGGCG CTTACCCTCA ACCACCGGAT GGCAAGTCGG TTCTCCTGGT GGTGGACGAT
TACCCTGAGA ACCTCATAAG CATGCGAGCC TTACTGGCCC GCACAGATTG GCAGGTGCTG
ACCGCAGGTT CAGGGACGGA AGCCTTGAGC GCCTTGCTGG AGCACGAAGT CGACCTTGTG
TTGCTCGACG TGCAGATGCC GGAAATGGAC GGTTTCGAGG TTGCGCGGCT GATGCGTGGT
AGCCACCGTA CCCGGCTGAC CCCGATCATC TTCCTTACCG CCAACGAGCA GTCCGATGCC
GCTGTGCTCA AGGGCTATGC CAGTGGTGCG GTGGACTACC TGTTCAAGCC GTTCGACCCG
CAGATCCTCA AGCCCAAGGT GCAGGCGCAA CTGGACCAGC AGCGTAACCG GCGCATGCAG
CAACGGCTGA CGCGCGAACT GGAGGCGGCC AGGGCGTTCA ATGCGTCCAT CCTGGAGAAT
GCCGCCGAAG GTATTCTGGT GGTCGACGCC CACGGCAACA TCAGCTTTGC CAATCCGGCG
ATCTCGCGCT TGCTCGATGC CCCGGTTGAG CAATTGCAGG GCGCGCAGCT GCTTGAATTG
CTGCAACTGC CCCATGCCAC CTTATGGAGC GAGTCGGATT TCCATCAGGC GTACCAGTCA
CGGCAGATCT TCCGAGTACA CGACGCCCAC CTGCGCACCG CAGGCGGTCA CCTGGTCCCG
GTGGCATTGT CCTGCGCGCC GTTGCCGGCC GATCAGCAGG CTATGGTGGT GACGGTGCTC
GACATGTCGG TAGTGCGCAA TTTGCACCAG CAGCTCGAAT ACCAGGCGGT CACCGACCCG
CTCACCGGCC TGCTCAACCG CCGTGGGTTC TATCAGGCAG CTGAAAGCGT GCTGCTGCGC
AACGAACGTT CGGACAAGGC CCAGGCCTTG ATGTACATGG ATTTGGATGG TTTCAAGCGG
ATCAATGACT CGCTTGGCCA CGAGGCCGGG GACCGGGTAC TGGGTTGGGT TGCCGAGCAG
CTCAAGGACT GCCTGGGCAG TGAGGCGCTG CTGGCGCGCA TGGGAGGAGA CGAGTTCACT
GCGCTCTTCG ATAGCCTGCC GTATCCGGAA CAAGCCGGCC GCTTTGCCGA GCAACTGCTC
GAGCGTATGT CCGTCCAGCG GCAGGTGGCC GGCCTGGATG TCTGCCTGGG TGTCAGCATT
GGTATTGCCA CCTTCCCGGA CTGCGGTGCC ACTGTCGAAG GCCTGTTGCG TGCCGCCGAT
GCTGCTATGT ATGCGGCCAA GCAGGCTGGG CGCGGGCAGT ATCGCTTCTA TGACCAGGAG
CTCAATGGCC GGGCGCGTTC ACGGCTGATG CTTGAGGACA GCGTACGTGA CGCAGTCGAG
TCGCAAGGCT TCAACATGGT GTATCAGCCC CAGGTCGCTT TCGCCGATGG TCATCTGCGC
GGTTTCGAAG CCCTGCTGCG CTGGCAGCAC CCCAGCGTCG GCGATGTACC GCCGGGGCTG
TTCATCCCCT TGCTTGAGGA GGCGCGACTG ATAACGCGCC TGGCCAGCTG GATCTACCGC
CAGGGCGCGG CGCAGCGTCA GGCCTGGTGT GAGCGTTTTG CTCCGGATCT GGTGCTGGGT
ATCAGCCTGA GCCGCGCTCA GTTCGCCATG CCTGGGCTTG TCGATGAGTT GCAGCGGGTG
ATACAGGATT ACCGGCTCAA CCCGGCGCAA CTGGAAGTGG AAGTTGCCGA GACCTCACTG
ATGTACAACA TCGACGCGGC GATCAAGCAG ATCCACCGCC TGCGCGAGCT GGGAGTGCGC
GTGGCGCTGG ACGACTTTGG TGCTGGCGAC TGCTCGCTGC GCATGCTGCG CGACCTGCCT
GTCGACACCT TGAAGCTGGA CCGCCATCTG GTGGCGCGCC TGCCCGATTC GGCGCCGGAC
GCCGCTTTGG TGCGTAGCGT CATTGGCCTG TGCGCCGATT ACAACGTCAC GGTCATCGCC
GAGGGCGTAG AAACTGAGGC CCAGGCTGCT TGGCTCAAGG CAAACGGTTG CGCCTACGTG
CAGGGCTTCC TTGTCGCCCG CCCGATGACT GCCGCCGATG CCAGCGGCTT TCCGGCATTT
TTTCCCTGGC CGCAGTCCTG A
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| Protein sequence | MDGAYPQPPD GKSVLLVVDD YPENLISMRA LLARTDWQVL TAGSGTEALS ALLEHEVDLV
LLDVQMPEMD GFEVARLMRG SHRTRLTPII FLTANEQSDA AVLKGYASGA VDYLFKPFDP
QILKPKVQAQ LDQQRNRRMQ QRLTRELEAA RAFNASILEN AAEGILVVDA HGNISFANPA
ISRLLDAPVE QLQGAQLLEL LQLPHATLWS ESDFHQAYQS RQIFRVHDAH LRTAGGHLVP
VALSCAPLPA DQQAMVVTVL DMSVVRNLHQ QLEYQAVTDP LTGLLNRRGF YQAAESVLLR
NERSDKAQAL MYMDLDGFKR INDSLGHEAG DRVLGWVAEQ LKDCLGSEAL LARMGGDEFT
ALFDSLPYPE QAGRFAEQLL ERMSVQRQVA GLDVCLGVSI GIATFPDCGA TVEGLLRAAD
AAMYAAKQAG RGQYRFYDQE LNGRARSRLM LEDSVRDAVE SQGFNMVYQP QVAFADGHLR
GFEALLRWQH PSVGDVPPGL FIPLLEEARL ITRLASWIYR QGAAQRQAWC ERFAPDLVLG
ISLSRAQFAM PGLVDELQRV IQDYRLNPAQ LEVEVAETSL MYNIDAAIKQ IHRLRELGVR
VALDDFGAGD CSLRMLRDLP VDTLKLDRHL VARLPDSAPD AALVRSVIGL CADYNVTVIA
EGVETEAQAA WLKANGCAYV QGFLVARPMT AADASGFPAF FPWPQS
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