Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0479 |
Symbol | |
ID | 6109387 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 525199 |
End bp | 525918 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641620235 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_001747353 |
Protein GI | 170719665 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TCGGCGAGCA CGACCTGCCC GAAGCCCAGG CCCATTACAT CGGCCGCGTG CTGCGCATGG CCCCCGGCGA TGCCGTGCAA TTGTTCGATG GCAGCGGCCA GGAATACCTG GGCCAATTGC TCGAAGTGGG CAAGAAGACC GTGCGCGTCA GCCTCGACCA GGCCGTTGCA GGCCAGGCCG AGTCGCCATT GCACATTCAT CTCGGCCAAG GCCTTTCCCG CGGCGAGCGC ATGGACTGGG CCATCCAGAA GGCCACCGAA CTGGGCGCCA ATGAAATCAC CCCGATCGTC AGCGAGCGCT GCGAAGTGCG CCTCAAAGAC GAGCGCGCCG ACAAGCGCCT CGCCCATTGG CGCCAGGTCG CGATCAGCGC CTGCGAGCAA TGCGGCCGCT CGATCTTGCC GATCATCCGC GCGCCAGTGA CCTTGGGTGA CTGGATCAAG GGCAGCGATG CTGACCTGAA ACTGGTCTTG CACCCTGTCG CTGAGCCGCT GACCAGTCAT GACAAACCGG CACGCCTGGC GTTTCTGATC GGACCCGAGG GAGGCTTGAG CGAAGCGGAA GTCGACCAGG CCAAGGGGGC AGGCTTCCAA GCTGCCCGTC TTGGCCCGCG GGTCCTGCGC ACTGAAACAG CGCCGGTGGT GGCCCTGTCG GTGGCGCAAC AGCTGTGGGG CGATTTTTAA
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Protein sequence | MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYL GQLLEVGKKT VRVSLDQAVA GQAESPLHIH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD ERADKRLAHW RQVAISACEQ CGRSILPIIR APVTLGDWIK GSDADLKLVL HPVAEPLTSH DKPARLAFLI GPEGGLSEAE VDQAKGAGFQ AARLGPRVLR TETAPVVALS VAQQLWGDF
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