Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0186 |
Symbol | radC |
ID | 6108965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 191084 |
End bp | 191764 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641619942 |
Product | DNA repair protein RadC |
Protein accession | YP_001747061 |
Protein GI | 170719373 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2003] DNA repair proteins |
TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.953222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000000662884 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGATAA GCGAGTGGCC AGCCGAGGAG CGGCCCAGGG AAAAGTTGAT GCAGCGAGGG GTGGGCAGCC TTTCTGATGC CGAATTGCTG GCTGTGTTTC TCGGCTCTGG CGTGCGCGGG CGCAACGTCG TGGAGCTGGC GCGAGGGCTG CTCGTCAAGT TCGGCGGCTT GCGCCAGTTG CTTGAAGCTG ACAGGGACGC ATTTGTGGGT GAGCTCGGGC TTGGGCCGGT GCGGTATGGT CAATTGCAGG CACTGCTGGA GATCGGGCGG CGCAACCTTG CCACCTCGAT CGAGCGCGAC TGCGCCCTGG AGAGCCCCTC TGCGGTGCGC AGATACCTGA AAGCCATGCT GCGTCATGAG CCTAGCGAAG TATTTGGCTG TCTGTTTCTG GATAGCAAAC ACCGGCCGTT GGCTTTCGAG ATCCTGTTCA GAGGGACGAT CGACAGGGCC AGCATCTATC CGCGGGAAGT GGTGCGCCGT TCGTTGATGC ATAACGCTGC GGCATTGATT CTCTGCCACA ACCATCCTTC GGGTAATAGT GAGCCGAGCC AGGACGATGT GCATATGACG CTTGCATTGA AGCGGGGGTT GGCGCTGATC GATGTGCGGG TGCTCGATCA CATTATCGTG GGTGATGGGG AGCCGCTGTC GATGGTGGAG CAGGGGTGGA TTGTCGCTTA G
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Protein sequence | MKISEWPAEE RPREKLMQRG VGSLSDAELL AVFLGSGVRG RNVVELARGL LVKFGGLRQL LEADRDAFVG ELGLGPVRYG QLQALLEIGR RNLATSIERD CALESPSAVR RYLKAMLRHE PSEVFGCLFL DSKHRPLAFE ILFRGTIDRA SIYPREVVRR SLMHNAAALI LCHNHPSGNS EPSQDDVHMT LALKRGLALI DVRVLDHIIV GDGEPLSMVE QGWIVA
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