| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0095 |
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| Symbol | |
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| ID | 6109265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 103050 |
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| End bp | 103973 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641619851 |
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| Product | choline ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001746970 |
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| Protein GI | 170719282 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.582516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0000731437 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGAAGT TCTCCACCAT CGTGTTCGCC CTGGCCCTGA GCCTGGGCAC CGCCACGGCC
CACGCCGAAA ACGCGCAATG CAGCACCGTA AGGATGGCCG ACCCCGGCTG GAGCGACATC
GCCACTACCA ACGCCATCGC CCGCTTGCTT CTGGAGAGCC TGGGCTATCA GGTGAAGATC
GACAGCCTGG CGGTGCCGAT CATCTACGGC GGCCTAAAGG ACGGTAAGGT CGATGCCTTC
CTGGGTAACT GGATGCCGGC GCATCAGGGT TTTCATGACA AGTTCGTTGC CAATGGCGAT
GTGCACCAGC TGTCGCGCAA CCTTGAAGGC ACCGAGTTCA CCCTGGCGGT ACCCGATTAC
GTGTGGGATG CCGGCGTGAA AAGCTTCGCC GACCTGCAAC AGCATGCCGA TCAGTTCGAC
AAGAAGCTGT ACGGAATCGG CTCGGGCGCG CCCGCCAACC TGTCGCTGAA GGAGATCATC
GACAAGAATG AATTCGATCT CGGCCAATGG AAGCTGGTCG AATCAAGCGA ACAGGCAATG
CTGGCGCAGG TCGACCGCGC CGTGAAGAAA AACCAGTACA TCACCTTCCT GGGCTGGACC
CCGCACCCGA TGAACGTAAA ACTGAAGATG CATTACCTGA CGGGCGGGGA GAAGTGGTTC
GGCAGCAAGG GTGAGGTCTA TACCCTGACG CGCAAAGGTT ATCCACAAGC CTGCCCTAAC
CCCGCAAAAT TGTTGGGTAA CCTGACATTC ACCCTGGACA TGGAAAACAG CATCATGGCT
GAGGTTGTAG ATAAGAAGAT CAGTTTCGAT GAAGCGGCCA AGGCGTGGGT CAAGGCGCAT
CCAGATCTGC TTCAAAAGTG GCTTGATGGA GTGACCACCA GTTCTGGCGG CGATGCCAAA
GAGGCTGTCA ACGCCAAACT CTGA
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| Protein sequence | MQKFSTIVFA LALSLGTATA HAENAQCSTV RMADPGWSDI ATTNAIARLL LESLGYQVKI
DSLAVPIIYG GLKDGKVDAF LGNWMPAHQG FHDKFVANGD VHQLSRNLEG TEFTLAVPDY
VWDAGVKSFA DLQQHADQFD KKLYGIGSGA PANLSLKEII DKNEFDLGQW KLVESSEQAM
LAQVDRAVKK NQYITFLGWT PHPMNVKLKM HYLTGGEKWF GSKGEVYTLT RKGYPQACPN
PAKLLGNLTF TLDMENSIMA EVVDKKISFD EAAKAWVKAH PDLLQKWLDG VTTSSGGDAK
EAVNAKL
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