Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0021 |
Symbol | |
ID | 6109191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 23185 |
End bp | 24651 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641619777 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001746896 |
Protein GI | 170719208 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG0845] Membrane-fusion protein [COG5569] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.249144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAATT CAACTATCAG CCTTGTGGTA TTGGCCGCGT TGGCTATCGG CGGTGGCGTT GGCTATCAGC TAGCAAAGCG TGGGCAGGTG TCCACTGCCT CCCCTGAAAC GCTACAGAAG GTGCTGTATT GGTATGACCC GATGTACCCC CAGCAGCACT TTCCAGCACC GGGCAAGTCG CCCTTCATGG ACATGCCACT GGTGCCGAAG TACCAGGAAA GCACCGCTGC TGAGGTGAGC CCCGCAGTTC AAGTTTCACA GGGGCTCCAA CAAAACCTGG GGGTCCGTCT GGCTACCGTA GCGAAAGGGC AGCTTGCTCG AACCCTCCAG GTGAGCGGCG TGCTTACCTT CGATGAGCGG GATTTTAGCG TTCTGCAGGC TCGTACCGGT GGCTACGTCG AACGCACCTA TGGCCGCGCT ACAGGCGACG TGGTTGCCAA GGGCGCCCCA TTGGCAGATG TGTTGACGCC TGAATGGGCG GGCTTGCAGG AAGAGTACCT GGCGCTTCAG CGATCTGGGG ACAATGAATT GCGCGCTGCA GCTCGGCAAC GACTACTGCT GGCGGGTATG CCTGCCGATC TTATCAACCG GATTGACCGT ACGGGAAGGG TCCAGAATTC GGTAACGCTC TTGGCCCCAA CAGCAGGCGT CCTTCAGGCT CTGGAATTGC GGCCAGGCAT GACAATGACA CCGGGTGCAA CGTTGGCGAA GATCAATGGT ATCGCGAACG TCTGGCTTGA GGCCGCAGTA CCTGAAGCGC AAGCCCAAGG CCTACAGGAA GGACAGGCAG TGCAGGCGAA TCTGGCAGCG TTCCCAGGCG AACCTGTTCC CGGCAAGCTG ACCGCATTGC TGGCTGATGC GGATCTGCAA AGCCGCACCT TGCGGCTTCG TATAGAACTG CCCAACCCCG GCGGCCGGTT GCGCCCAGGC ATGACCGCGC AGGTTTCCCT CCATCCGTCC GGGCAACAGG ATGACAGCCT ACTGGTGCCA GCCGAGGCGA TCATTCGGAC GGGGAAACGC GATCTCGTAA TGGTGTCAGA AGACGGAGGT CGATTCCGGC CGGTGGAAGT AGTGCTCGGC CAGGAAAGTG CTGGCCAGGT GGTCGTGCTG CGAGGCCTTC AGGCGGGCCA GCGCGTTGTG GCGTCCGGGC AGTTTCTGCT GGACTCCGAA GCGAGCTTGA AAGGTATCGA GGCCGTTACT GCTGGCGATG CTCCACTTGC GCAACCTGTA CAGCCGGCTC TACATCAGGC CAATGGGCGC ATCGTTCAAA TAGAAGGTAA TCAGCTGACC ATCGCTCATG GACCGTTCGT GACGCTGGGC ATGCCTGGTA TGACGATGAC TTTCCCTGTG GCAGATCCCC GCTTGATTGC CGGACTCAAG GTTGGCGAAC GCATCCGGTT TGGAGTGCGC GAGCGCGATG AAGGCATGGT CATCGAGCAA ATAACCCAGC AGGAGAACCA GCCATGA
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Protein sequence | MRNSTISLVV LAALAIGGGV GYQLAKRGQV STASPETLQK VLYWYDPMYP QQHFPAPGKS PFMDMPLVPK YQESTAAEVS PAVQVSQGLQ QNLGVRLATV AKGQLARTLQ VSGVLTFDER DFSVLQARTG GYVERTYGRA TGDVVAKGAP LADVLTPEWA GLQEEYLALQ RSGDNELRAA ARQRLLLAGM PADLINRIDR TGRVQNSVTL LAPTAGVLQA LELRPGMTMT PGATLAKING IANVWLEAAV PEAQAQGLQE GQAVQANLAA FPGEPVPGKL TALLADADLQ SRTLRLRIEL PNPGGRLRPG MTAQVSLHPS GQQDDSLLVP AEAIIRTGKR DLVMVSEDGG RFRPVEVVLG QESAGQVVVL RGLQAGQRVV ASGQFLLDSE ASLKGIEAVT AGDAPLAQPV QPALHQANGR IVQIEGNQLT IAHGPFVTLG MPGMTMTFPV ADPRLIAGLK VGERIRFGVR ERDEGMVIEQ ITQQENQP
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