Gene PputW619_0021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_0021 
Symbol 
ID6109191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp23185 
End bp24651 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content60% 
IMG OID641619777 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001746896 
Protein GI170719208 
COG category[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown 
COG ID[COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.249144 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAATT CAACTATCAG CCTTGTGGTA TTGGCCGCGT TGGCTATCGG CGGTGGCGTT 
GGCTATCAGC TAGCAAAGCG TGGGCAGGTG TCCACTGCCT CCCCTGAAAC GCTACAGAAG
GTGCTGTATT GGTATGACCC GATGTACCCC CAGCAGCACT TTCCAGCACC GGGCAAGTCG
CCCTTCATGG ACATGCCACT GGTGCCGAAG TACCAGGAAA GCACCGCTGC TGAGGTGAGC
CCCGCAGTTC AAGTTTCACA GGGGCTCCAA CAAAACCTGG GGGTCCGTCT GGCTACCGTA
GCGAAAGGGC AGCTTGCTCG AACCCTCCAG GTGAGCGGCG TGCTTACCTT CGATGAGCGG
GATTTTAGCG TTCTGCAGGC TCGTACCGGT GGCTACGTCG AACGCACCTA TGGCCGCGCT
ACAGGCGACG TGGTTGCCAA GGGCGCCCCA TTGGCAGATG TGTTGACGCC TGAATGGGCG
GGCTTGCAGG AAGAGTACCT GGCGCTTCAG CGATCTGGGG ACAATGAATT GCGCGCTGCA
GCTCGGCAAC GACTACTGCT GGCGGGTATG CCTGCCGATC TTATCAACCG GATTGACCGT
ACGGGAAGGG TCCAGAATTC GGTAACGCTC TTGGCCCCAA CAGCAGGCGT CCTTCAGGCT
CTGGAATTGC GGCCAGGCAT GACAATGACA CCGGGTGCAA CGTTGGCGAA GATCAATGGT
ATCGCGAACG TCTGGCTTGA GGCCGCAGTA CCTGAAGCGC AAGCCCAAGG CCTACAGGAA
GGACAGGCAG TGCAGGCGAA TCTGGCAGCG TTCCCAGGCG AACCTGTTCC CGGCAAGCTG
ACCGCATTGC TGGCTGATGC GGATCTGCAA AGCCGCACCT TGCGGCTTCG TATAGAACTG
CCCAACCCCG GCGGCCGGTT GCGCCCAGGC ATGACCGCGC AGGTTTCCCT CCATCCGTCC
GGGCAACAGG ATGACAGCCT ACTGGTGCCA GCCGAGGCGA TCATTCGGAC GGGGAAACGC
GATCTCGTAA TGGTGTCAGA AGACGGAGGT CGATTCCGGC CGGTGGAAGT AGTGCTCGGC
CAGGAAAGTG CTGGCCAGGT GGTCGTGCTG CGAGGCCTTC AGGCGGGCCA GCGCGTTGTG
GCGTCCGGGC AGTTTCTGCT GGACTCCGAA GCGAGCTTGA AAGGTATCGA GGCCGTTACT
GCTGGCGATG CTCCACTTGC GCAACCTGTA CAGCCGGCTC TACATCAGGC CAATGGGCGC
ATCGTTCAAA TAGAAGGTAA TCAGCTGACC ATCGCTCATG GACCGTTCGT GACGCTGGGC
ATGCCTGGTA TGACGATGAC TTTCCCTGTG GCAGATCCCC GCTTGATTGC CGGACTCAAG
GTTGGCGAAC GCATCCGGTT TGGAGTGCGC GAGCGCGATG AAGGCATGGT CATCGAGCAA
ATAACCCAGC AGGAGAACCA GCCATGA
 
Protein sequence
MRNSTISLVV LAALAIGGGV GYQLAKRGQV STASPETLQK VLYWYDPMYP QQHFPAPGKS 
PFMDMPLVPK YQESTAAEVS PAVQVSQGLQ QNLGVRLATV AKGQLARTLQ VSGVLTFDER
DFSVLQARTG GYVERTYGRA TGDVVAKGAP LADVLTPEWA GLQEEYLALQ RSGDNELRAA
ARQRLLLAGM PADLINRIDR TGRVQNSVTL LAPTAGVLQA LELRPGMTMT PGATLAKING
IANVWLEAAV PEAQAQGLQE GQAVQANLAA FPGEPVPGKL TALLADADLQ SRTLRLRIEL
PNPGGRLRPG MTAQVSLHPS GQQDDSLLVP AEAIIRTGKR DLVMVSEDGG RFRPVEVVLG
QESAGQVVVL RGLQAGQRVV ASGQFLLDSE ASLKGIEAVT AGDAPLAQPV QPALHQANGR
IVQIEGNQLT IAHGPFVTLG MPGMTMTFPV ADPRLIAGLK VGERIRFGVR ERDEGMVIEQ
ITQQENQP