Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5444 |
Symbol | |
ID | 5873259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 6076511 |
End bp | 6078193 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641550580 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | YP_001671661 |
Protein GI | 167036430 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATTA AACGCACGAT CCTGATCGCC GCGCTGGCAG TCGTGTCCTA CGTCATGGTC CTGAAGTGGA ACGATGACTA CGGCCAGGCT GCCCTGCCGA CTCAGAATAC TGCTGCCAGC ACTGTTGCTC CGGGCTTGCC CGATGGCGTG CCGGCCGGTA ACAACGGTGC CAGCGCCGAT GTACCGAGCG CCAACGCCGA ATCGAGCCCT GCCGAACTGG CACCGGTCGC ACTCAGCAAG GACCTGATCC GAGTCAAGAC CGACGTTCTG GAACTGGCTA TCGATCCGGT CGGTGGTGAC ATCGTCCAGT TGAACCTGCC GAAGTACCCA CGCCGTCAAG ACCACCCGGA CATTCCGTTC CAGTTGTTCG ACAACGGTGG TGAGCGTGTT TACCTGGCAC AAAGCGGCCT GACCGGCGCC AACGGCCCGG ATGCCCGCGC CAGCGGTCGC CCGCTGTATG CCGCCGAGCA GAAGAGCTAC CAGCTGGCCG ACGGCCAGGA ACAACTGGTG GTCGACCTGA AGTTCAGCGA CAACGGTGTC AACTACATCA AGCGCTTCAG CTTCAAGCGC GGTGAGTACG ACCTGAATGT CAGCTACCTG ATCGACAACC AGAGCGGCCA GGCCTGGAGC GGCAACATGT TTGCCCAGCT CAAGCGTGAC GCCAGCGGCG ATCCTTCTTC CAGCACCGCC ACCGGTACTG CGACCTACCT GGGTGCAGCC CTGTGGACAG CTTCCGAGCC TTACAAAAAG GTCTCGATGA AGGACATCGA CAAAGGTGGT TTGAAAGAAA ATGTGTCCGG CGGCTGGGTT GCCTGGCTGC AGCACTACTT CGTCACCGCC TGGATTCCGG CCAAGTCGGA CAACAACGTT GTTCAGACCC GCAAGGACAG CCAGGGTAAC TACATCATTG GCTACACCGG CCCCGTAATC AGCGTGCCTG CTGGCGGCAA GGTCGAAACC AGCGCCATGC TGTACGCCGG CCCGAAGATT CAGTCCAAGC TGAAAGAGTT GTCCCCAGGC CTGGAACTGA CCGTCGACTA CGGCTTCCTG TGGTTCATCG CCCAACCGAT CTTCTGGCTG CTGCAACATA TCCACAGCCT CCTGGGTAAC TGGGGCTGGT CGATCATCGT GCTGACCATG CTGATCAAAG GCCTGTTCTT CCCTCTGTCG GCTGCCAGCT ACCGCTCCAT GGCCCGTATG CGTGCCGTTG CACCTAAGCT CGCCGCCCTG AAGGAACGCT TCGGTGACGA TCGCCAGAAG ATGTCCCAGG CGATGATGGA GCTGTACAAG AAAGAGAAGA TCAACCCGCT GGGCGGCTGC CTGCCGATCC TGGTACAGAT GCCGGTCTTC CTGGCCTTGT ACTGGGTACT GCTGGAAAGC GTGGAAATGC GCCAGGCTCC GTGGATGCTG TGGATTACCG ACCTGTCGAT CAAGGATCCG TTCTTCATCC TGCCGATCAT CATGGGCGCC ACCATGTTCA TCCAGCAGCG CCTGAACCCG ACGCCGCCGG ATCCGATGCA GGCCAAGGTG ATGAAAATGA TGCCGATCAT CTTCACCTTC TTCTTCCTGT GGTTCCCGGC CGGTCTGGTG CTGTACTGGG TTGTGAACAA CTGCCTGTCG ATTTCGCAGC AGTGGTACAT CACTCGCCGT ATCGAAGCAG CTACCAAAAA AGCTGCTGCT TGA
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Protein sequence | MDIKRTILIA ALAVVSYVMV LKWNDDYGQA ALPTQNTAAS TVAPGLPDGV PAGNNGASAD VPSANAESSP AELAPVALSK DLIRVKTDVL ELAIDPVGGD IVQLNLPKYP RRQDHPDIPF QLFDNGGERV YLAQSGLTGA NGPDARASGR PLYAAEQKSY QLADGQEQLV VDLKFSDNGV NYIKRFSFKR GEYDLNVSYL IDNQSGQAWS GNMFAQLKRD ASGDPSSSTA TGTATYLGAA LWTASEPYKK VSMKDIDKGG LKENVSGGWV AWLQHYFVTA WIPAKSDNNV VQTRKDSQGN YIIGYTGPVI SVPAGGKVET SAMLYAGPKI QSKLKELSPG LELTVDYGFL WFIAQPIFWL LQHIHSLLGN WGWSIIVLTM LIKGLFFPLS AASYRSMARM RAVAPKLAAL KERFGDDRQK MSQAMMELYK KEKINPLGGC LPILVQMPVF LALYWVLLES VEMRQAPWML WITDLSIKDP FFILPIIMGA TMFIQQRLNP TPPDPMQAKV MKMMPIIFTF FFLWFPAGLV LYWVVNNCLS ISQQWYITRR IEAATKKAAA
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