| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5443 |
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| Symbol | trmE |
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| ID | 5873258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 6075052 |
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| End bp | 6076422 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641550579 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001671660 |
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| Protein GI | 167036429 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACTG TGCGTGAAAC CATCGCCGCC ATCGCCACCG CCCAAGGCCG CGGTGGTGTA
GGTATTGTCA GGCTGTCCGG CCCCTTGGCT GGCAAGGCAG GCCAGTTGAT CACCGGTCGC
ACGCTGACCC CGCGGCATGC CCATTACGGC CCGTTCCGCG ACGATGACGG GCTTGTGCTG
GACGAAGGGA TAGCGCTGTT CTTCCCTGGG CCGAATTCGT TCACGGGTGA GGACGTGCTC
GAACTGCAGG GCCATGGCGG CCCAGTGGTC CTCGACATGC TGCTGCAGCG CTGTGTACAA
GTGGGGTGCC GGCTCGCCCG GCCGGGTGAA TTCAGCGAGC GCGCGTTCCT CAACGACAAG
CTCGACCTGG CTCAGGCAGA AGCCATCGCC GACCTGATCG AGGCCAGTTC CAGCCAGGCG
GCGCGCAATG CCCTGCGCTC GCTGCAGGGG GAATTCTCCA AGCGTGTGCA CAGCCTGACC
GAGGCCTTGA TTGCCCTGCG CATCTACGTC GAGGCGGCGA TCGACTTCCC TGAGGAGGAA
ATCGACTTTC TCGCCGATGG CCACGTACTG TCGATGCTCG ATGCTGTGCG CGGCGAGTTA
TCCACCGTGC AGCGTGAGGC CGGGCAGGGG GCATTGCTGC GTGACGGTAT GACTGTGGTT
ATCGCCGGCC GGCCCAATGC TGGAAAATCA AGCTTGCTGA ACCAGCTGGC CGGTCGGGAA
GCAGCCATCG TCACCGATAT CGCCGGCACC ACCCGGGACA TCCTGCGTGA ACATATCCAC
ATCGACGGTA TGCCGCTGCA TGTGGTCGAT ACCGCCGGTT TGCGTGATAC CGATGACCAT
GTGGAGAAAA TCGGTGTGGA ACGCGCCCTG AAGGCCATTG GCGAGGCTGA TCGTGTGCTG
CTGGTGGTCG ACTCCACCGC GCCCGAAGCA AGCGACCCAT TCGCGCTGTG GCCCGAGTTT
CTCGACCAGC GGCCAGACCC GGCCAAGGTC ACGCTGATTC GTAACAAGGC TGATCTGAGT
GGTGAGCACG TAGGGCTGGA GCAGTGCGAT GACGGCCATG TGACCATTAC CCTCAGCGCC
AAGGGCGACG ACACGGGGTT GCAACTGCTG CGCGACCATC TCAAGGCCTG TATGGGTTAC
GAACAGACTG CAGAGAGTGG CTTCAGTGCC CGCCGGCGCC ACCTGGATGC CTTGCGCCAG
GCTAGCGAGC ATCTGGAGCA CGGCCGTGCC CAATTGACCT TGGCGGGCGC AGGAGAGCTC
CTGGCTGAAG ACTTGCGCCA GGCACAGCAT GCCCTGGGGG AAATTACCGG GGCATTCAGC
TCGGATGACC TGCTGGGGCG GATTTTCTCC AGCTTCTGCA TCGGCAAGTA A
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| Protein sequence | MNTVRETIAA IATAQGRGGV GIVRLSGPLA GKAGQLITGR TLTPRHAHYG PFRDDDGLVL
DEGIALFFPG PNSFTGEDVL ELQGHGGPVV LDMLLQRCVQ VGCRLARPGE FSERAFLNDK
LDLAQAEAIA DLIEASSSQA ARNALRSLQG EFSKRVHSLT EALIALRIYV EAAIDFPEEE
IDFLADGHVL SMLDAVRGEL STVQREAGQG ALLRDGMTVV IAGRPNAGKS SLLNQLAGRE
AAIVTDIAGT TRDILREHIH IDGMPLHVVD TAGLRDTDDH VEKIGVERAL KAIGEADRVL
LVVDSTAPEA SDPFALWPEF LDQRPDPAKV TLIRNKADLS GEHVGLEQCD DGHVTITLSA
KGDDTGLQLL RDHLKACMGY EQTAESGFSA RRRHLDALRQ ASEHLEHGRA QLTLAGAGEL
LAEDLRQAQH ALGEITGAFS SDDLLGRIFS SFCIGK
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