Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5379 |
Symbol | |
ID | 5873194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 6007172 |
End bp | 6008461 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550515 |
Product | major facilitator transporter |
Protein accession | YP_001671596 |
Protein GI | 167036365 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.40701 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCCG TGCCGAGCAG TATCGAGCAG CCCTCGCGGC CGCTGACCCG CAGTGACTAC AAGACCCTCT CACTGTCCGC CCTGGGCGGC GCGCTGGAGT TCTACGACTT CATTATTTTC GTGTTCTTCG CCACGGTGGT GGGCAAGTTG TTCTTCCCGG CCGACATGCC GGAGTGGCTG CGCCTGATGC AAACGTTCGG CATCTTCGCC GCTGGCTACC TGGCGCGGCC GTTGGGCGGC ATCATCATGG CCCATTTCGG CGACCTGCTC GGGCGCAAGA AGATGTTCAC CCTGAGCATT TTCATGATGG CCGTGCCGAC CCTGATCATG GGCCTGCTGC CGACGTATGC ACAAATCGGC ATGTGGGCAC CTATCCTGCT GTTGCTGATG CGCGTGATCC AAGGCGCGGC GATCGGCGGC GAGGTGCCGG GTGCCTGGGT GTTCGTCTCC GAGCATGTGC CAGCGCGCAA CACTGGCTAC GCCTGCGGTA CCCTGACGGC AGGCCTGACC GCCGGCATTC TGCTTGGCTC GCTGGTAGCG ACACTGATCA ACAGTGTGTA CAGCGTGGAA GAAGTGGCCG ATTACGCCTG GCGTATCCCG TTCCTGCTGG GTGGCGTGTT CGGCCTGTTC TCGGTCTACC TGCGCCGCTG GCTGCACGAA ACCCCGGTGT TCGCCGAAAT GCAGCAACGT AAGGCACTGG CCGAGGAGCT GCCACTGCGC GCCGTGCTGC GTGACCACCG TGGCCCGATC ATCCTGTCGA TGTTGCTGAC CTGGATGCTG TCGGCCGGGA TCGTGGTGGT CATCCTGATG ACCCCGGCGC TGCTGCAGAG CTTCTACCAC ATCAGCCCGA CCGACTCGCT CAAGGCCAAC AGCCTGGCCA TTGTATTGCT TAGCTTTGGC TGCATCGGCG CCGGCAGCCT GGCCGACCGC TTTGGTGCGG GCCGGGTGTT CGTGATCGGC AGCCTGCTGC TGCTGGCCAG CTCCTGGACC TTCTACCACA GCCTGCCAAC CCGGCCCGAG CTGCTGTTCC CGCTGTATGC CGTGACCGGC CTGTGCGTGG GCGTGATTGG CGCGGTGCCT TATGTAATGG TCAAGGCATT CCCGGCGGCG GTGCGCTTCA GCGGGCTGTC GTTCTCGTAC AACGTGGCCT ACGCGATCTT CGGCGGTTTG ACGCCGATGG TGGTGACCGC GCTGCTGAAG GTGAGCCCGA TGGCGCCTGC CTACTATGTG GCAGGCTTGT GCGCCGTTGG TCTGGCTGTG GGGCTGTACC TGCTCGCCAA CAAGCGCTGA
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Protein sequence | MTSVPSSIEQ PSRPLTRSDY KTLSLSALGG ALEFYDFIIF VFFATVVGKL FFPADMPEWL RLMQTFGIFA AGYLARPLGG IIMAHFGDLL GRKKMFTLSI FMMAVPTLIM GLLPTYAQIG MWAPILLLLM RVIQGAAIGG EVPGAWVFVS EHVPARNTGY ACGTLTAGLT AGILLGSLVA TLINSVYSVE EVADYAWRIP FLLGGVFGLF SVYLRRWLHE TPVFAEMQQR KALAEELPLR AVLRDHRGPI ILSMLLTWML SAGIVVVILM TPALLQSFYH ISPTDSLKAN SLAIVLLSFG CIGAGSLADR FGAGRVFVIG SLLLLASSWT FYHSLPTRPE LLFPLYAVTG LCVGVIGAVP YVMVKAFPAA VRFSGLSFSY NVAYAIFGGL TPMVVTALLK VSPMAPAYYV AGLCAVGLAV GLYLLANKR
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