Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5178 |
Symbol | |
ID | 5872993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5790294 |
End bp | 5792135 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550316 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_001671398 |
Protein GI | 167036167 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGATT ATCGTTCCAA GACTTCCACC CAAGGCCGCA ACATGGCCGG CGCCCGTGCC CTGTGGCGCG CCACCGGGAT GAAGGACGAA GACTTCAAGA AACCGATCAT CGCCATCGCC AACTCGTTCA CCCAGTTCGT CCCGGGCCAC GTGCACCTGA AGGACCTGGG CCAGCTGGTT GCCCGCGAAA TCGAACGCGC CGGTGGCGTG GCCAAGGAAT TCAACACCAT CGCGGTCGAT GACGGCATCG CCATGGGCCA CGACGGCATG CTGTACTCGC TGCCAAGCCG CGAGATCATT GCCGACGCCG TGGAATACAT GGTCAACGCC CACTGCGCCG ACGCCATCGT CTGTATCTCC AACTGCGACA AGATCACCCC CGGCATGCTG ATGGCCGCCC TGCGCCTGAA CATCCCGGTG ATCTTCGTGT CCGGTGGCCC GATGGAAGCC GGCAAGACCA AGCTGGCCAG CCACGGCCTG GACCTGGTCG ATGCCATGGT GATCGCTGCC GACTCCTCGG CTTCCGATGA AAAAGTCGCC GAATACGAGC GCAGCGCCTG CCCGACCTGC GGTTCGTGCT CCGGCATGTT CACCGCCAAC TCGATGAACT GCCTGACCGA AGCCCTGGGC CTGGCCCTGC CGGGCAACGG CTCGACCCTG GCCACCCACG CCGACCGCGA GCAGCTGTTC CTCACCGCCG GCCGCACCAT CGTCGAGCTG TGCAAACGCT ACTACGGCGA GAACGACGAG TCGGTACTGC CACGCAGCAT CGCCAACTTC AAGGCGTTCG AAAACGCCAT GATGCTCGAC ATCGCCATGG GCGGTTCGAC CAACACCATC CTGCACCTGC TGGCCGCAGC CCAGGAAGGC GAAGTCGAAT TCGATCTGCG TGACATCGAT CGCCTGTCGC GCAAAGTGCC GCAGCTGTGC AAAGTGGCGC CGAACATCCA GAAGTACCAC ATGGAAGACG TGCACCGCGC CGGCGGCATC TTCAGCATCC TCGGTTCGCT GGCCCGTGGC GGCCTGCTGC ACACCGACCT GCCGACCGTG CACAGCCGCA GCATGGAAGA AGCCATCGCC AAATGGGACA TCACCCAGAC CGATGACGAA GCCGTGCACA CCTTCTTCAA GGCCGGCCCT GCCGGTATCC CGACGCAGAC CGCGTTCAGC CAGTCGACCC GTTGGGAAAC CCTCGACGAC GACCGTGAAA ACGGCTGCAT CCGCAGCTTC GAGCACGCCT ACTCGCAAGA GGGCGGCCTG GCCGTGCTGT ACGGCAACAT CGCCCTGGAT GGCTGCGTGG TGAAAACCGC TGGCGTAGAC GAATCGATCC ACGTATTCGA AGGCAATGCC AAAATCTTCG AGAGCCAGGA CAGCGCGGTG CGCGGCATTC TTGCCGACGA GGTGAAGGCG GGCGACATCG TGATCATCCG CTACGAAGGC CCGAAAGGCG GCCCAGGCAT GCAGGAAATG CTGTACCCGA CCTCGTACCT GAAGTCCAAA GGCCTGGGCA AGGCTTGCGC CCTGCTCACC GACGGCCGCT TCTCGGGCGG CACCTCGGGC CTGTCGATCG GCCACGCCTC GCCGGAAGCC GCTGCTGGCG GCGCCATCGG CCTGGTGCGC GACGGCGACA AGGTGTTGAT CGACATCCCC AACCGTTCGA TCAACCTGCT GGTCAGCGAT GAAGAACTGG CCGAGCGCCG CGTCGAACAG GACAAGAAGG GCTGGAAGCC TGCGGAAGTA CGCCCACGCA AGGTGACCAC CGCGCTGAAG GCCTATGCCC TGCTGGCGAC CAGTGCCGAC AAGGGTGCTG TGCGTAACAA GGCGATGCTG GAAGGGCTCT GA
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Protein sequence | MPDYRSKTST QGRNMAGARA LWRATGMKDE DFKKPIIAIA NSFTQFVPGH VHLKDLGQLV AREIERAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSREII ADAVEYMVNA HCADAIVCIS NCDKITPGML MAALRLNIPV IFVSGGPMEA GKTKLASHGL DLVDAMVIAA DSSASDEKVA EYERSACPTC GSCSGMFTAN SMNCLTEALG LALPGNGSTL ATHADREQLF LTAGRTIVEL CKRYYGENDE SVLPRSIANF KAFENAMMLD IAMGGSTNTI LHLLAAAQEG EVEFDLRDID RLSRKVPQLC KVAPNIQKYH MEDVHRAGGI FSILGSLARG GLLHTDLPTV HSRSMEEAIA KWDITQTDDE AVHTFFKAGP AGIPTQTAFS QSTRWETLDD DRENGCIRSF EHAYSQEGGL AVLYGNIALD GCVVKTAGVD ESIHVFEGNA KIFESQDSAV RGILADEVKA GDIVIIRYEG PKGGPGMQEM LYPTSYLKSK GLGKACALLT DGRFSGGTSG LSIGHASPEA AAGGAIGLVR DGDKVLIDIP NRSINLLVSD EELAERRVEQ DKKGWKPAEV RPRKVTTALK AYALLATSAD KGAVRNKAML EGL
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