Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5151 |
Symbol | |
ID | 5872966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5763574 |
End bp | 5764749 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550289 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_001671371 |
Protein GI | 167036140 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.294445 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.707101 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCAA CGCTGTCCAC TCCCGGCGCG GTGCGCTTCA CCAGCCTGCC GCCGCTGGCG CTGTACATCC ACATCCCGTG GTGCGTACGC AAATGCCCTT ACTGCGACTT CAACTCCCAC GCTGCCGGGC CTGAACTGCC GGAAGACGCC TACGTCACAG CACTGCTGGA CGACCTCGAC CAGGAACTGG CCGCCGTGCA AGGCCGCCCG ATCAGCTCGA TCTTTTTCGG TGGCGGTACG CCCAGCCTGT TCAGCGCCAA CGCCCTTGGC CGTTTGCTGC GCGGCGTGGA ACAGCGCATC CCGTTTGCGC CAGACATCGA AATTACCCTG GAAGCCAACC CAGGCACCTT CGAGCAGGAC AAGTTCAAGG CCTACCGGCA AACCGGCATC AACCGCCTGT CCATCGGTGT GCAGAGCTTC CAACCGGCCA AGCTGGAGGC GCTGGGGCGC ATTCACAACG GCGATGAAGC GGTGCGTGCC GCCGGCATGG CACGCGCCGC CGGCTTCGAC AACTTCAACA TGGACCTGAT GCACGGCCTG CCCGACCAGT CGCTGGATGA TGCGCTGGGC GACCTGCGCC AGGCCATTGA CCTGGGGCCG ACGCACCTGT CGTGGTACCA GCTGACCGTG GAACCAAACA CGGTATTCTG GAACCAACCG CCAGAGCTGC CCGAAGACGA CATCCTCTGG GACATCCAGG AAGCCGGCCA GGCGCTGATG ACCGAGCACG GTTACCGCCA GTACGAGGTA TCGGCGTATG CGCAGGCAGG CCGCGCCGCC CGGCACAACC TCAACTACTG GCGCTTCGGC GACTTCATCG GCATCGGTGC AGGTGCCCAC GGCAAGCTCA CCTTCGCCGA CGGGCGCATC CTGCGCACCT GGAAGACCCG CCTGCCCAAG GACTACCTGA ACCTGGCCAA GCCGTTCAAG GCCGGCGAGA AGCTATTGCC GGTGGACGAG CTGCCGTTCG AGTTCCTGAT GAACGCCCTG CGGCTTACCG ATGGCGTGGA AGCCGAACTG TTTACCCAAC GCACGGGCTT GCCATTGGAA CAACTGCGCG AGGCACGCCG CGCCGCCGAA CAAAAGGGCC TTTTGCAGGT CGAACCGGAT CGACTGGTGG CCACGCCAAG GGGCCAGTTG TTCCTCAATG ACCTGCTGCA GTATTTCTTG ACCTAA
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Protein sequence | MIATLSTPGA VRFTSLPPLA LYIHIPWCVR KCPYCDFNSH AAGPELPEDA YVTALLDDLD QELAAVQGRP ISSIFFGGGT PSLFSANALG RLLRGVEQRI PFAPDIEITL EANPGTFEQD KFKAYRQTGI NRLSIGVQSF QPAKLEALGR IHNGDEAVRA AGMARAAGFD NFNMDLMHGL PDQSLDDALG DLRQAIDLGP THLSWYQLTV EPNTVFWNQP PELPEDDILW DIQEAGQALM TEHGYRQYEV SAYAQAGRAA RHNLNYWRFG DFIGIGAGAH GKLTFADGRI LRTWKTRLPK DYLNLAKPFK AGEKLLPVDE LPFEFLMNAL RLTDGVEAEL FTQRTGLPLE QLREARRAAE QKGLLQVEPD RLVATPRGQL FLNDLLQYFL T
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