| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5144 |
|---|
| Symbol | |
|---|
| ID | 5872959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5758527 |
|---|
| End bp | 5759213 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550282 |
|---|
| Product | alanine racemase domain-containing protein |
|---|
| Protein accession | YP_001671364 |
|---|
| Protein GI | 167036133 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCC TAGCAGACAA CCTTTCCGCG ATTTCCGCCC GTATCGCCAG CGCCGCCCAG
GCAGCCGGGC GCGATCCGGC CAGCGTTCAG TTGCTGGCCG TGAGCAAGAC CAAGCCGGCC
AGCGCCATCC GCGAGATCCA CACCGCAGGC GTGCGCGATT TCGGGGAGAA CTACCTACAG
GAAGCGCTGA CAAAGCAGCA GGAGCTCAGC GACTTGCCCT TGATCTGGCA CTTCATCGGC
CCCATTCAGT CGAACAAGAC CAAGGCCATC GCCGAGCATT TCGACTGGGT ACATTCCGTG
GACCGCCTGA AAATTGCCCA ACGCCTGTCC GAGCAGCGCC CTGCCGGTCT GGCGCCGCTA
AACCTCTGCC TGCAAGTGAA CGTGAGTGGC GAAGACAGCA AGTCTGGCTG CGCCCCCGCA
GACCTGCCGG CCTTGGCCAA GGCCGTGGCC GGGCTGCCCA ACCTGCGCTT GCGCGGGCTG
ATGGCAATCC CCGAGCCCAC CGACGACCGC GCCGCCCAGG AGGCTGCCTT CGCCCATTTG
CGCCAGTTGC AGGAAAACCT GGGGCTTGAT CTGGACACCC TGTCCATGGG CATGAGCCAC
GATCTGGAAG CCGCGATCGC ACAGGGTGCG ACCTGGGTGC GTATCGGCAC CGCCCTGTTC
GGTGCCCGCG ACTACGGCAA CACCTGA
|
|---|
| Protein sequence | MSTLADNLSA ISARIASAAQ AAGRDPASVQ LLAVSKTKPA SAIREIHTAG VRDFGENYLQ
EALTKQQELS DLPLIWHFIG PIQSNKTKAI AEHFDWVHSV DRLKIAQRLS EQRPAGLAPL
NLCLQVNVSG EDSKSGCAPA DLPALAKAVA GLPNLRLRGL MAIPEPTDDR AAQEAAFAHL
RQLQENLGLD LDTLSMGMSH DLEAAIAQGA TWVRIGTALF GARDYGNT
|
|---|
| |