Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5134 |
Symbol | |
ID | 5872949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5746035 |
End bp | 5748488 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641550272 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001671354 |
Protein GI | 167036123 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGATACGTC TGCTGAAGTT CTTCTGGTGG TCATCCGTCG CAGTCATCTG CGCGCTCGTA CTCGGTGTGA GCGGTGCGTT TCTGTATCTT AGCCCCAGCC TGCCCTCGGT CGAGTCACTC AGAAGCATCC AGTTGCAGAT CCCACTCAGG GTGTACAGCA GCGACGGCAA GCTGATTGCC GAATTCGGCG AAATGCGCCG CTCGCCGATC CGCTTCGCGG AAATTCCCCC ACAATTCATT CAGGCGCTGC TGTCAGCTGA GGACGACAAC TTCCTCAACC ACTATGGTGT AGACCCCAGC AGCCTGATGC GTGCCGCGAC CCAGCTGGTG AAAACCGGGC ACATCCAGAC CGGCGGCAGC ACCATCACCA TGCAGGTGGC GAAGAACTTC TTCCTCACCA GCGAGCGCAG CTTCTCGCGC AAGACCAACG AAATCCTGCT GGCCCTGCAG ATCGAGCGTG AGCTGACCAA GGACGAAATC CTTGAGCTGT ACGTGAACAA GATCTACCTG GGCAACCGCG CCTACGGTAT CGACGCCGCT GCGCAGGTGT ACTACGGCAA GTCGATCCGT GACGTGAGCC TGGCGCAGAT GGCGATGATC GCCGGCCTGC CCAAAGCACC GTCGCGCTTC AACCCACTGG CCAACCCGGC ACGTGCCAAG GAACGCCGCG ACTGGATCCT CGGCCGCATG TACAAGCTGG GCAAGATCGA CGAGGCCAGC TACCAGGCCG CCTTGGCCGA GCCGCTCAAC GCCAGCTACC ACGTACCGAC GCCTGAAGTG AATGCCCCGT ACATCGCTGA AATGGCCCGC GCGGAAATGG TCGGCCGTTA CGGCAGCGAT GCCTATACCG AGGGCTTCCG CGTCACGACC ACCGTGCCCA GCGACATGCA GGAAATGGCC AACAAGGCCG TCCTCAACGG GCTTTCCGAT TACGACGAAC GCCACGGTTA CCGCGGCCCT GAAGCACGCT TCCCGGGCCG TACCCAGGCA GCTTGGCTGC AGGAACTGGG CAAGCAACGC ACCCTCGGCG GCCTGGAGCC AGCCATTGTC ACTCAAGTTG AAAAAACCGG CCTCAAAGTG CTGACCCGTG ACGGCCAGGA AGCGCAGGTT GCTTGGGACA CCATGAAATG GGCGCGCCCG TTCATCAACA GCAACGCCCA GGGGCGCACA CCGCAGTCGC CTTCCGACGT GGCGCAGGTC GGTGACCTGG TGCGCTTGCA ACGTCTGGAA GATGGCAAGT TCAAGTTCAG CCAGGTGCCC GGTGCGCAGA GTGCACTGGT TACCCTCGAC CCCTACAACG GCGCCATCCG CGCCCTGGTC GGCGGCTTCT CGTTCGAGCA GAGCAACTAC AACCGCGCCA TGCAGGCCAA GCGCCAACCT GGCTCTAGTT TCAAGCCATT CATCTACAGC GCCGCGCTGG ACAGCGGTTA CACCGCCGCC ACCCTGGTCA ACGATGCGCC GATCGTGTTC GTTGACGAGT CGGTGGATAA AGTGTGGCGG CCGAAGAACG ACACCAACAC CTTCCTCGGC CCGATCCGCA TGCGTGAGGC GCTGTACAAA TCGCGCAACC TGGTGTCGAT CCGCCTGCTG CAGGCCATGG GCGTGGACCG CACCATCGAC TACATCGCCA AGTTCGGCTT CAACAAGCAG GACCTGCCGC GCAACCTGTC GCTGGCACTG GGTACCGCCA CCCTGACCCC GATGGAAATC GCCACCGGGT GGAGCACCTT TGCCAACGGT GGCTACAAGA TCACCCCTTA CCTGATCGAC CGCATCGAAA GCCGCAGCGG CGAGACGCTG TTTACTTCCA ACCCAGCCCG CGTACCGCAA GGTGCCGAGG ACCAGGCTGG CCTGGCCGCA CCCGAGCAGC CAATCAGCAC CGCCGCCATG CCAGGCGAAG CACCGCCTGC CTTCAGTCAG GTGGCAACTG CACCACAAGC GCCGGCGATA GCCGAACAGA TCGTCGACGG GCGTACCACC TACATCCTCA CCAGCATGCT GCAGGACGTG ATCAAGCGCG GTACCGGTCG CCGGGCACTG GCCTTGGGCC GTACCGACCT GGCGGGCAAG ACCGGTACCA CCAACGAATC CAAGGACGCC TGGTTCTCGG GCTACAACGC CGACTACGTG ACGACCGTGT GGGTCGGTTT CGACCAGCCA GAAACGCTCG GTCGCCGCGA GTACGGCGGT ACGGCGGCGC TGCCGATCTG GATGAGTTTC ATGGGCGCGG CGCTCAAGGA CAAACCGGCG CATGCGCCAG CAGAACCGGA AGGCATCCTC AGCCTGCGGG TGGACCCGGT CAGCGGGCGC GCCGCCTCGC CGAGCACACC GAATGCCTAC TTCGAGCTGT TCAAGGCCGA AGACTCGCCG CCATCGGTGG ACGAGCTGGG CAATGGCGCG GCACCGGGCA GCCCGCTGCC AGCCGATGAA GCAGCGCCGA TGGATCTGTT CTGA
|
Protein sequence | MIRLLKFFWW SSVAVICALV LGVSGAFLYL SPSLPSVESL RSIQLQIPLR VYSSDGKLIA EFGEMRRSPI RFAEIPPQFI QALLSAEDDN FLNHYGVDPS SLMRAATQLV KTGHIQTGGS TITMQVAKNF FLTSERSFSR KTNEILLALQ IERELTKDEI LELYVNKIYL GNRAYGIDAA AQVYYGKSIR DVSLAQMAMI AGLPKAPSRF NPLANPARAK ERRDWILGRM YKLGKIDEAS YQAALAEPLN ASYHVPTPEV NAPYIAEMAR AEMVGRYGSD AYTEGFRVTT TVPSDMQEMA NKAVLNGLSD YDERHGYRGP EARFPGRTQA AWLQELGKQR TLGGLEPAIV TQVEKTGLKV LTRDGQEAQV AWDTMKWARP FINSNAQGRT PQSPSDVAQV GDLVRLQRLE DGKFKFSQVP GAQSALVTLD PYNGAIRALV GGFSFEQSNY NRAMQAKRQP GSSFKPFIYS AALDSGYTAA TLVNDAPIVF VDESVDKVWR PKNDTNTFLG PIRMREALYK SRNLVSIRLL QAMGVDRTID YIAKFGFNKQ DLPRNLSLAL GTATLTPMEI ATGWSTFANG GYKITPYLID RIESRSGETL FTSNPARVPQ GAEDQAGLAA PEQPISTAAM PGEAPPAFSQ VATAPQAPAI AEQIVDGRTT YILTSMLQDV IKRGTGRRAL ALGRTDLAGK TGTTNESKDA WFSGYNADYV TTVWVGFDQP ETLGRREYGG TAALPIWMSF MGAALKDKPA HAPAEPEGIL SLRVDPVSGR AASPSTPNAY FELFKAEDSP PSVDELGNGA APGSPLPADE AAPMDLF
|
| |