Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5122 |
Symbol | |
ID | 5872937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5729627 |
End bp | 5730871 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641550260 |
Product | major facilitator transporter |
Protein accession | YP_001671342 |
Protein GI | 167036111 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAAAACTG CTGTAGCCCC CCTTCCTGCC GAGCCCGAAC CTGCCACCCT GAACGACATG TGGATCGAAA AAGGCACCCC CGCCTTCATG AAGACCGTGC TGGCCCTGTT CAGCGGCGGC TTCGCCACCT TCGCCCTGCT GTACTGCGTA CAGCCGATGA TGCCGCTGCT GTCCAAGGAA TTTGCCATCA ACGCGGCGCA AAGCAGCTTG GTGCTGTCGG TGTCCACTGC CATGCTGGCG TTCGGCCTGC TGATCACCGG CCCCATTTCT GACCGCATCG GGCGCAAGCC GGTGATGGTG TTCGCCTTGG TCTGCGCCGC CCTGTCCACC CTGGCCAGCG CAGTGATGCC GAGCTGGGAG CTGGTACTGG CCACCCGTGC GTTGGTCGGC CTGTCGTTGA GCGGCCTGGC TGCGGTGGCA ATGACCTACC TGAGCGAAGA GATCCACCCG CAACACATTG GCCTGGCAAT GGGTCTGTAC ATCGGCGGCA ACGCGATTGG CGGCATGAGT GGGCGGCTAA TCACTGGCGT CCTGATCGAC TTCGTCAGCT GGCACACGGC GATGCTGACC ATCGGTGGCC TGGCCCTGGT AGCCGCACTG GTGTTCTGGA AGGTACTGCC CGAATCGCGC AACTTCCGCC CGCAGATGAT GAGCCCGCGC AGCCTTCTGG ATGGCTTTGT CATGCATTTC AAGGATGCCG GCCTGCCCTG GCTGTTCCTC GAAGCCTTCC TGCTGATGGG TGCGTTCGTC ACCTTGTTCA ACTATATCGG CTACCGGCTG CTGGCCGAGC CTTACCACAT GAACCAGGCG CTGGTGGGCT TGCTGTCGGT GGTTTATCTG TCGGGCATCT ACAGCTCGGC GCAAGTCGGT GCCCTGGCTG ACAAGCTGGG CCGGCGCAAG GTGTTCTGGG CCAGTATCGT GGTGATGGCC GGCGGCTTGC TGATGACCCT GGCCAGCCCG CTGGCCATGG TGATCGTGGG TATGCTGGTG TTCACCTTCG GCTTCTTTGG CGCACACTCG GTGGCCAGCA GCTGGATCGG ACGCAGAGCG CTGAAGGCCA AGGGACAGGC GTCGTCGCTG TACCTGTTCA GCTACTACGC AGGGTCCAGC GTGGCCGGTA CGGCGGGCGG GGTGTTCTGG CACCAGTGGG GCTGGAATGG CATTGGGCTG TTCATTGGCA GCTTGCTGGC GGTGGCGTTG CTGGTGGCGT TGCACCTGAG CAAGTTACCC CCTAAATCGA GCTGA
|
Protein sequence | MKTAVAPLPA EPEPATLNDM WIEKGTPAFM KTVLALFSGG FATFALLYCV QPMMPLLSKE FAINAAQSSL VLSVSTAMLA FGLLITGPIS DRIGRKPVMV FALVCAALST LASAVMPSWE LVLATRALVG LSLSGLAAVA MTYLSEEIHP QHIGLAMGLY IGGNAIGGMS GRLITGVLID FVSWHTAMLT IGGLALVAAL VFWKVLPESR NFRPQMMSPR SLLDGFVMHF KDAGLPWLFL EAFLLMGAFV TLFNYIGYRL LAEPYHMNQA LVGLLSVVYL SGIYSSAQVG ALADKLGRRK VFWASIVVMA GGLLMTLASP LAMVIVGMLV FTFGFFGAHS VASSWIGRRA LKAKGQASSL YLFSYYAGSS VAGTAGGVFW HQWGWNGIGL FIGSLLAVAL LVALHLSKLP PKSS
|
| |